Evidence map›Paper›PMID 37875878›Full record

ArticleProteome science2023

Quantitative proteomics analysis reveals the key proteins related to semen quality in Niangya yaks.

Yaomei Wang, Yuchao Liu, Tingting Cao, Chunyuan Shi, Zili Ren, Yanling Zhao

Open access · goldAbstract read
In one paragraph

Article in Proteome science, 2023. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 2 papers.

0numbers the graph read from it
0cells of the map it votes in
2citing papers in PubMed
1.6field-weighted citation impact, top 15% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

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Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

2 citing papers in PubMed, 6 citations in OpenAlex.

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4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

6 authors at 1 institution in 1 country.

Yaomei WangTibet Agricultural and Animal Husbandry University, Linzhi, Tibet, 860000, P.R. China.
Yuchao LiuTibet Agricultural and Animal Husbandry University, Linzhi, Tibet, 860000, P.R. China.
Tingting CaoTibet Agricultural and Animal Husbandry University, Linzhi, Tibet, 860000, P.R. China.
Chunyuan ShiTibet Agricultural and Animal Husbandry University, Linzhi, Tibet, 860000, P.R. China.
Zili RenTibet Agricultural and Animal Husbandry University, Linzhi, Tibet, 860000, P.R. China.
Yanling ZhaoTibet Agricultural and Animal Husbandry University, Linzhi, Tibet, 860000, P.R. China. ylzhaohn@163.com.
Tibet University · CN

Funding

Natural Science Foundation of Tibet Autonomous Region XZ202001ZR0069G
6 · The paper itself

Abstract

backgroundProteins related to sperm motility and sperm morphology have an important impact on sperm function such as metabolism, motility and fertilisation etc. An understanding of the key proteins related to semen quality in Niangya yaks would help to provide support for breeding. However, the key proteins that affect semen quality in Niangya yaks remain unclear.

methodsHerein, we applied tandem mass tag (TMT) labeling and liquid chromatography-tandem mass spectrometry (LC‒MS/MS) to analyze the expression levels of sperm proteins in groups of high- and low-quality semen from Niangya yaks. And fifteen differentially expressed proteins (DEPs) were randomly selected for expression level validation by parallel reaction monitoring (PRM).

resultsOf the 2,092 quantified proteins, 280 were identified as DEPs in the high-quality group versus the low-quality group. Gene Ontology (GO) analysis revealed that in terms of biological pathways, the DEPs were mainly involved in metabolic processes, cell transformation processes, and single organism metabolic processes. In terms of cell composition, the DEPs were mainly located in the cell membrane, organelle, molecular complex. In terms of molecular functions, the most abundant functions of the DEPs were catalytic activity, binding activity, transport activity, and enzyme regulation activity. Kyoto Encyclopedia of Genes and Genomes (KEGG) analysis revealed that the DEPs were mainly involved in the cytokine and cytokine receptor interaction, notch signaling pathway, lysine biosynthesis, renal function-related protein and proteasome pathway. From protein-protein interaction (PPI) analysis of DEPs involved in important pathways, 6 related proteins affecting the semen quality of Niangya yaks were identified. And the results of the PRM and TMT analysis were consistent.

conclusionsThe differential sperm proteomic analysis of high- and low-quality semen from Niangya yaks, revealed 6 proteins (PSMC5, PSMD8, PSMB3, HSP90AA1, UGP2 and HSPB1), were mainly concentrated in energy production and metabolism, might play important roles in semen quality, which could serve as candidates for the selection and breeding of Niangya yaks.

Indexed as

Comparative proteomicsDifferentially expressed proteinsNiangya yaksPRMSemen quality

Identifiers

PMID37875878
PMCPMC10594827
OpenAlexW4387905243

What Socratic holds

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LicenceCC BY
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Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the Socratic graph.