Evidence map›Paper›PMID 37884965›Full record

ArticlePlant methods2023

A plant protein farnesylation system in prokaryotic cells reveals Arabidopsis AtJ3 produced and farnesylated in E. coli maintains its function of protecting proteins from heat inactivation.

Jia-Rong Wu, Rida Zohra, Ngoc Kieu Thi Duong, Ching-Hui Yeh, Chung-An Lu, Shaw-Jye Wu

Open access · goldAbstract read
In one paragraph

Article in Plant methods, 2023. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 1 paper.

0numbers the graph read from it
0cells of the map it votes in
1citing papers in PubMed
0.3field-weighted citation impact, top 36% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

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Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

1 citing paper in PubMed, 2 citations in OpenAlex.

  1. Review
4 · The record

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PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

6 authors at 1 institution in 1 country.

Jia-Rong Wu *Department of Life Sciences, National Central University, 300 Jhong-Da Road, Jhong-Li District, Taoyuan, 32001, Taiwan.
Rida Zohra *Department of Life Sciences, National Central University, 300 Jhong-Da Road, Jhong-Li District, Taoyuan, 32001, Taiwan.
Ngoc Kieu Thi DuongDepartment of Life Sciences, National Central University, 300 Jhong-Da Road, Jhong-Li District, Taoyuan, 32001, Taiwan.
Ching-Hui YehDepartment of Life Sciences, National Central University, 300 Jhong-Da Road, Jhong-Li District, Taoyuan, 32001, Taiwan.
Chung-An LuDepartment of Life Sciences, National Central University, 300 Jhong-Da Road, Jhong-Li District, Taoyuan, 32001, Taiwan. chungan@cc.ncu.edu.tw.
Shaw-Jye WuDepartment of Life Sciences, National Central University, 300 Jhong-Da Road, Jhong-Li District, Taoyuan, 32001, Taiwan. jyewu@cc.ncu.edu.tw.
National Central University · TW

Funding

National Science and Technology Council NSTC 112-2311-B-008-002National Science and Technology Council, Taiwan NSTC 111-2311-B-008-001
6 · The paper itself

Abstract

backgroundProtein farnesylation involves the addition of a 15-carbon polyunsaturated farnesyl group to proteins whose C-terminus ends with a CaaX motif. This post-translational protein modification is catalyzed by a heterodimeric protein, i.e., farnesyltransferase (PFT), which is composed of an α and a β subunit. Protein farnesylation in plants is of great interest because of its important roles in the regulation of plant development, responses to environmental stresses, and defense against pathogens. The methods traditionally used to verify whether a protein is farnesylated often require a specific antibody and involve isotope labeling, a tedious and time-consuming process that poses hazardous risks.

resultsSince protein farnesylation does not occur in prokaryotic cells, we co-expressed a known PFT substrate (i.e., AtJ3) and both the α and β subunits of Arabidopsis PFT in E. coli in this study. Farnesylation of AtJ3 was detected using electrophoretic mobility using SDS-PAGE and confirmed using mass spectrometry. AtJ3 is a member of the heat shock protein 40 family and interacts with Arabidopsis HSP70 to protect plant proteins from heat-stress-induced denaturation. A luciferase-based protein denaturation assay demonstrated that farnesylated AtJ3 isolated from E. coli maintained this ability. Interestingly, farnesylated AtJ3 interacted with E. coli HSP70 as well and enhanced the thermotolerance of E. coli. Meanwhile, AtFP3, another known PFT substrate, was farnesylated when co-expressed with AtPFTα and AtPFTβ in E. coli. Moreover, using the same strategy to co-express rice PFT α and β subunit and a potential PFT target, it was confirmed that OsDjA4, a homolog of AtJ3, was farnesylated.

conclusionWe developed a protein farnesylation system for E. coli and demonstrated its applicability and practicality in producing functional farnesylated proteins from both mono- and dicotyledonous plants.

Indexed as

ArabidopsisAtJ3Heat stressHSP40OsDjA4Post-translational modificationProtein farnesylationProtein farnesyltransferaseThermotolerance

Identifiers

PMID37884965
PMCPMC10604809
OpenAlexW4387965438

What Socratic holds

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LicenceCC BY
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Registered trials

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Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the Socratic graph.