Evidence map›Paper›PMID 37888285›Full record

ArticleJournal of fungi (Basel, Switzerland)2023

Transcriptomics of Temporal- versus Substrate-Specific Wood Decay in the Brown-Rot Fungus

Byoungnam Min, Steven Ahrendt, Anna Lipzen, Cristina E Toapanta, Robert A Blanchette, Dan Cullen, David S Hibbett, Igor V Grigoriev

Open access · goldAbstract read
PubMed Full text at PMC Publisher
In one paragraph

Article in Journal of fungi (Basel, Switzerland), 2023. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 1 paper.

0numbers the graph read from it
0cells of the map it votes in
1citing papers in PubMed
0.6field-weighted citation impact, top 31% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

1 citing paper in PubMed, 3 citations in OpenAlex.

  1. Review
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

8 authors at 4 institutions in 1 country.

Byoungnam MinUS Department of Energy Joint Genome Institute, Lawrence Berkeley National Laboratory, Berkeley, CA 94720, USA.
Steven AhrendtUS Department of Energy Joint Genome Institute, Lawrence Berkeley National Laboratory, Berkeley, CA 94720, USA.
Anna LipzenUS Department of Energy Joint Genome Institute, Lawrence Berkeley National Laboratory, Berkeley, CA 94720, USA.ORCID 0000-0003-2293-9329
Cristina E ToapantaDepartment of Plant Pathology, University of Minnesota, St. Paul, MN 55108, USA.ORCID 0000-0001-7169-5688
Robert A BlanchetteDepartment of Plant Pathology, University of Minnesota, St. Paul, MN 55108, USA.ORCID 0000-0003-2819-6511
Dan CullenUSDA Forest Products Laboratory, Madison, WI 53726, USA.
David S HibbettBiology Department, Clark University, Worcester, MA 01610, USA.
Igor V GrigorievUS Department of Energy Joint Genome Institute, Lawrence Berkeley National Laboratory, Berkeley, CA 94720, USA.ORCID 0000-0002-3136-8903
Lawrence Berkeley National Laboratory · USUniversity of Minnesota · USClark University · USForest Products Laboratory · US

Funding

National Science Foundation DEB-1457721National Science Foundation IOS-1456548National Science Foundation IOS-1456777National Science Foundation IOS-1456958United States Department of Energy DE-AC02-05CH11231
6 · The paper itself

Abstract

Brown-rot fungi lack many enzymes associated with complete wood degradation, such as lignin-attacking peroxidases, and have developed alternative mechanisms for rapid wood breakdown. To identify the effects of culture conditions and wood substrates on gene expression, we grew

Indexed as

brown-rot fungiFibroporia radiculosatranscriptomicswood decay

Identifiers

PMID37888285
PMCPMC10608345
OpenAlexW4387780810

What Socratic holds

Textmetadata
LicenceCC BY
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the Socratic graph.