Evidence map›Paper›PMID 37904922›Full record

ArticlebioRxiv : the preprint server for biology2023

Phospholipid isotope tracing reveals β-catenin-driven suppression of phosphatidylcholine metabolism in hepatocellular carcinoma.

Chad VanSant-Webb, Hayden K Low, Junko Kuramoto, Claire E Stanley, Hantao Qiang, Audrey Su, Alexis N Ross, Chad G Cooper, James E Cox, Scott A Summers and 2 more

Open access · greenAbstract readPreprint
In one paragraph

Article in bioRxiv : the preprint server for biology, 2023. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Not yet cited in PubMed.

0numbers the graph read from it
0cells of the map it votes in
0citing papers in PubMed
–field-weighted citation impact
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

0 citing papers in PubMed, 1 citations in OpenAlex.

No citing paper in PubMed yet.

4 · The record

Corrections and comments

5 · Who and what money

Authors and funding

12 authors at 2 institutions in 2 countries.

Chad VanSant-WebbDepartment of Pathology, University of Utah School of Medicine. Salt Lake City UT, 84112, USA.
Hayden K LowDepartment of Biochemistry, University of Utah School of Medicine. Salt Lake City UT, 84112, USA.
Junko KuramotoDepartment of Pathology, University of Utah School of Medicine. Salt Lake City UT, 84112, USA.
Claire E StanleyDepartment of Biochemistry, University of Utah School of Medicine. Salt Lake City UT, 84112, USA.
Hantao QiangDepartment of Biochemistry, University of Utah School of Medicine. Salt Lake City UT, 84112, USA.
Audrey SuDepartment of Pathology, University of Utah School of Medicine. Salt Lake City UT, 84112, USA.
Alexis N RossDepartment of Pathology, University of Utah School of Medicine. Salt Lake City UT, 84112, USA.
Chad G CooperDepartment of Biochemistry, University of Utah School of Medicine. Salt Lake City UT, 84112, USA.
James E CoxDepartment of Biochemistry, University of Utah School of Medicine. Salt Lake City UT, 84112, USA.
Scott A SummersDepartment of Nutrition and Integrative Physiology, University of Utah College of Health. Salt Lake City, UT 84112 USA.
Kimberley J EvasonDepartment of Pathology, University of Utah School of Medicine. Salt Lake City UT, 84112, USA.
Gregory S DuckerDepartment of Biochemistry, University of Utah School of Medicine. Salt Lake City UT, 84112, USA.
University of Utah · USKeio University · JP

Funding

Serotonergic antidepressants as liver tumor preventivesR01CA222570 · NCI · UNIVERSITY OF UTAH · PI EVASON, KIMBERLEY JANE · 2018 to 2022
$1.8M
Glycine metabolism in cancer - Research Supplement to Promote Diversity in Health-Related Research; VelascoR00CA215307 · NCI · UNIVERSITY OF UTAH · PI DUCKER, GREGORY S · 2019 to 2021
$814k
NCI NIH HHS R00 CA215307NCI NIH HHS R01 CA222570
6 · The paper itself

Abstract

Background and Aims: Activating mutations in the Methods: We employed untargeted lipidomics and targeted isotope tracing to quantify phospholipid production fluxes in an inducible human liver cell line expressing mutant β-catenin, as well as in transgenic zebrafish with activated β-catenin-driven HCC. Results: In both models, activated β-catenin expression was associated with large changes in the lipidome including conserved increases in acylcarnitines and ceramides and decreases in triglycerides. Lipid flux analysis in human cells revealed a large reduction in phosphatidylcholine (PC) production rates as assayed by choline tracer incorporation. We developed isotope tracing lipid flux analysis for zebrafish and observed similar reductions in phosphatidylcholine synthesis flux accomplished by sex-specific mechanisms. Conclusions: The integration of isotope tracing with lipid abundances highlights specific lipid class transformations downstream of β-catenin signaling in HCC and suggests future HCC-specific lipid metabolic targets.

Indexed as

CeramidesFlux analysisIsotope tracingLipid metabolism

Identifiers

PMID37904922
PMCPMC10614757
OpenAlexW4387665043

What Socratic holds

Textmetadata
LicenceCC BY-NC-ND
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the Socratic graph.