Evidence map›Paper›PMID 37909043›Full record

ArticleStructure (London, England : 1993)2024

Cryo-EM structure of a Shigella podophage reveals a hybrid tail and novel decoration proteins.

Sundharraman Subramanian, Silje M Bergland Drarvik, Kendal R Tinney, Kristin N Parent

Open access · bronzeAbstract read
In one paragraph

Article in Structure (London, England : 1993), 2024. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 9 papers.

0numbers the graph read from it
0cells of the map it votes in
9citing papers in PubMed
3.2field-weighted citation impact, top 8% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

9 citing papers in PubMed, 13 citations in OpenAlex.

  1. Article
  2. Article
  3. TheJournal of virology · 2025
    Article
  4. Article
  5. Review
  6. Article
  7. Moo19 and B2: Structures ofScience advances · 2024
    Article
  8. Article
  9. Ejectosome ofPNAS nexus · 2024
    Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

4 authors at 1 institution in 1 country.

Sundharraman SubramanianDepartment of Biochemistry and Molecular Biology, Michigan State University, East Lansing, MI 48824, USA.
Silje M Bergland DrarvikDepartment of Biochemistry and Molecular Biology, Michigan State University, East Lansing, MI 48824, USA.
Kendal R TinneyDepartment of Biochemistry and Molecular Biology, Michigan State University, East Lansing, MI 48824, USA.
Kristin N ParentDepartment of Biochemistry and Molecular Biology, Michigan State University, East Lansing, MI 48824, USA. Electronic address: kparent@msu.edu.
Michigan State University · US

Funding

Midwest Consortium for High Resolution Cryoelectron MicroscopyU24GM116789 · NIGMS · PURDUE UNIVERSITY · PI BULLITT, ESTHER, DAI, WEI · 2017 to 2021
$3.5M
Bacteriophage interactions with enteric pathogens-the essential role of inner membrane protein YajCR35GM140803 · NIGMS · MICHIGAN STATE UNIVERSITY · PI Kristin N Parent · 2021 to 2026
$2.5M
Sf6 as a model system for understanding the mechanisms of virus: host recognitionR01GM110185 · NIGMS · MICHIGAN STATE UNIVERSITY · PI PARENT, KRISTIN N · 2015 to 2019
$1.4M
NIGMS NIH HHS R01 GM110185NIGMS NIH HHS R35 GM140803NIGMS NIH HHS U24 GM116789
6 · The paper itself

Abstract

There is a paucity of high-resolution structures of phages infecting Shigella, a human pathogen and a serious threat to global health. HRP29 is a Shigella podophage belonging to the Autographivirinae family, and has very low sequence identity to other known phages. Here, we resolved the structure of the entire HRP29 virion by cryo-EM. Phage HRP29 has a highly unusual tail that is a fusion of a T7-like tail tube and P22-like tailspikes mediated by interactions from a novel tailspike adaptor protein. Understanding phage tail structures is critical as they mediate hosts interactions. Furthermore, we show that the HRP29 capsid is stabilized by two novel, and essential decoration proteins, gp47 and gp48. Only one high resolution structure is currently available for Shigella podophages. The presence of a hybrid tail and an adapter protein suggests that it may be a product of horizontal gene transfer, and may be prevalent in other phages.

Indexed as

BacteriophagesShigellaCapsidCapsid ProteinsCryoelectron MicroscopyHumansViral Tail ProteinsCapsid ProteinsViral Tail Proteinsbacteriophagecapsidcryo-EMvirionvirus

Identifiers

PMID37909043
PMCPMC10842012
OpenAlexW4388097764

What Socratic holds

Textmetadata
LicenceTDM
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the Socratic graph.