Evidence map›Paper›PMID 37915134›Full record

ArticleBMB reports2024

Single-cell RNA sequencing reveals the heterogeneity of adipose tissue-derived mesenchymal stem cells under chondrogenic induction.

Jeewan Chun, Ji-Hoi Moon, Kyu Hwan Kwack, Eun-Young Jang, Saebyeol Lee, Hak Kyun Kim, Jae-Hyung Lee

Open access · goldAbstract readNews
In one paragraph

Article in BMB reports, 2024. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 5 papers.

0numbers the graph read from it
0cells of the map it votes in
5citing papers in PubMed
0.9field-weighted citation impact, top 22% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

5 citing papers in PubMed, 3 citations in OpenAlex.

  1. Trial
  2. Article
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  4. Article
  5. Review
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

7 authors at 2 institutions in 1 country.

Jeewan ChunDepartment of Oral Microbiology, College of Dentistry, Kyung Hee University, Seoul 02447; Department of Dentistry, Graduate School, Kyung Hee University, Seoul 02447, Korea.
Ji-Hoi MoonDepartment of Oral Microbiology, College of Dentistry, Kyung Hee University, Seoul 02447, Korea.
Kyu Hwan KwackDepartment of Oral Microbiology, College of Dentistry, Kyung Hee University, Seoul 02447, Korea.
Eun-Young JangDepartment of Oral Microbiology, College of Dentistry, Kyung Hee University, Seoul 02447; Department of Dentistry, Graduate School, Kyung Hee University, Seoul 02447, Korea.
Saebyeol LeeDepartment of Life Science, Chung-Ang University, Seoul 06974, Korea.
Hak Kyun KimDepartment of Life Science, Chung-Ang University, Seoul 06974, Korea.
Jae-Hyung LeeDepartment of Oral Microbiology, College of Dentistry, Kyung Hee University, Seoul 02447, Korea.
Kyung Hee University · KRChung-Ang University · KR

Funding

No grant is acknowledged in the PubMed record.

6 · The paper itself

Abstract

This study investigated how adipose tissue-derived mesenchymal stem cells (AT-MSCs) respond to chondrogenic induction using droplet-based single-cell RNA sequencing (scRNA-seq). We analyzed 37,219 high-quality transcripts from control cells and cells induced for 1 week (1W) and 2 weeks (2W). Four distinct cell clusters (0-3), undetectable by bulk analysis, exhibited varying proportions. Cluster 1 dominated in control and 1W cells, whereas clusters (3, 2, and 0) exclusively dominated in control, 1W, and 2W cells, respectively. Furthermore, heterogeneous chondrogenic markers expression within clusters emerged. Gene ontology (GO) enrichment analysis of differentially expressed genes unveiled cluster-specific variations in key biological processes (BP): (1) Cluster 1 exhibited up-regulation of GO-BP terms related to ribosome biogenesis and translational control, crucial for maintaining stem cell properties and homeostasis; (2) Additionally, cluster 1 showed up-regulation of GO-BP terms associated with mitochondrial oxidative metabolism; (3) Cluster 3 displayed up-regulation of GO-BP terms related to cell proliferation; (4) Clusters 0 and 2 demonstrated similar up-regulation of GO-BP terms linked to collagen fibril organization and supramolecular fiber organization. However, only cluster 0 showed a significant decrease in GO-BP terms related to ribosome production, implying a potential correlation between ribosome regulation and the differentiation stages of AT-MSCs. Overall, our findings highlight heterogeneous cell clusters with varying balances between proliferation and differentiation before, and after, chondrogenic stimulation. This provides enhanced insights into the single-cell dynamics of AT-MSCs during chondrogenic differentiation. [BMB Reports 2024; 57(5): 232-237].

Indexed as

Adipose TissueCell DifferentiationChondrogenesisMesenchymal Stem CellsSequence Analysis, RNASingle-Cell AnalysisCells, CulturedGene Expression ProfilingGene OntologyHumans

Identifiers

PMID37915134
PMCPMC11139680
OpenAlexW4387566685

What Socratic holds

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LicenceCC BY-NC
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Registered trials

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Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the Socratic graph.