Evidence map›Paper›PMID 37925639›Full record

ArticleCell reports2023

Hepatic palmitoyl-proteomes and acyl-protein thioesterase protein proximity networks link lipid modification and mitochondria.

Sarah L Speck, Dhaval P Bhatt, Qiang Zhang, Sangeeta Adak, Li Yin, Guifang Dong, Chu Feng, Wei Zhang, M Ben Major, Xiaochao Wei and 1 more

Open access · goldAbstract read
In one paragraph

Article in Cell reports, 2023. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 12 papers.

0numbers the graph read from it
0cells of the map it votes in
12citing papers in PubMed
1.7field-weighted citation impact, top 15% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

12 citing papers in PubMed, 11 citations in OpenAlex.

  1. Review
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  9. Article
  10. Review
  11. Mechanisms and functions of protein S-acylation.Nature reviews. Molecular cell biology · 2024
    Review
  12. Depalmitoylation and cell physiology: APT1 as a mediator of metabolic signals.American journal of physiology. Cell physiology · 2024
    Review
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

11 authors at 2 institutions in 2 countries.

Sarah L SpeckDivision of Endocrinology, Metabolism & Lipid Research, Washington University, St. Louis, MO 63110, USA.
Dhaval P BhattDepartment of Cell Biology & Physiology, Washington University, St. Louis, MO 63110, USA.
Qiang ZhangDivision of Endocrinology, Metabolism & Lipid Research, Washington University, St. Louis, MO 63110, USA.
Sangeeta AdakDivision of Endocrinology, Metabolism & Lipid Research, Washington University, St. Louis, MO 63110, USA.
Li YinDivision of Endocrinology, Metabolism & Lipid Research, Washington University, St. Louis, MO 63110, USA.
Guifang DongDivision of Endocrinology, Metabolism & Lipid Research, Washington University, St. Louis, MO 63110, USA; Hubei Key Laboratory of Animal Nutrition and Feed Science, Wuhan Polytechnic University, Wuhan 430023, China.
Chu FengDivision of Endocrinology, Metabolism & Lipid Research, Washington University, St. Louis, MO 63110, USA.
Wei ZhangDivision of Endocrinology, Metabolism & Lipid Research, Washington University, St. Louis, MO 63110, USA.
M Ben MajorDepartment of Cell Biology & Physiology, Washington University, St. Louis, MO 63110, USA; Department of Otolaryngology, Washington University, St. Louis, MO 63110, USA.
Xiaochao WeiDivision of Endocrinology, Metabolism & Lipid Research, Washington University, St. Louis, MO 63110, USA. Electronic address: weixiaochao@wustl.edu.
Clay F SemenkovichDivision of Endocrinology, Metabolism & Lipid Research, Washington University, St. Louis, MO 63110, USA; Department of Cell Biology & Physiology, Washington University, St. Louis, MO 63110, USA. Electronic address: csemenko@wustl.edu.
Washington University in St. Louis · USWuhan Polytechnic University · CN

Funding

Washington University Center for Cellular ImagingP30CA091842 · NCI · WASHINGTON UNIVERSITY · PI AIMEE S JAMES · 2001 to 2026
$128.0M
NATIONAL RESEARCH SERVICE AWARD-MEDICAL SCIENTISTT32GM007200 · NIGMS · WASHINGTON UNIVERSITY · PI YOKOYAMA, WAYNE M. · 1985 to 2024
$59.8M
Washington University Institute of Clinical and Translational SciencesUL1TR000448 · NCATS · WASHINGTON UNIVERSITY · PI EVANOFF, BRADLEY A · 2012 to 2016
$41.4M
Washington University Nutrition Obesity Research CenterP30DK056341 · NIDDK · WASHINGTON UNIVERSITY · PI Dominic N Reeds · 1999 to 2026
$30.2M
WU P&FP30DK020579 · NIDDK · WASHINGTON UNIVERSITY · PI Clay F. Semenkovich · 2013 to 2026
$27.1M
TrainingP41GM103422 · NIGMS · WASHINGTON UNIVERSITY · PI YARASHESKI, KEVIN E · 2012 to 2019
$12.0M
Lipidation and Vascular DiseaseR01HL157154 · NHLBI · WASHINGTON UNIVERSITY · PI SEMENKOVICH, CLAY F. · 2021 to 2024
$1.6M
Depalmitoylation regulates hepatic glucose metabolismF30DK131830 · NIDDK · WASHINGTON UNIVERSITY · PI SPECK, SARAH LILLY · 2021 to 2023
$136k
NCATS NIH HHS UL1 TR000448NCI NIH HHS P30 CA091842NHLBI NIH HHS R01 HL157154NIDDK NIH HHS F30 DK131830NIDDK NIH HHS P30 DK020579NIDDK NIH HHS P30 DK056341NIGMS NIH HHS P41 GM103422NIGMS NIH HHS T32 GM007200
6 · The paper itself

Abstract

Acyl-protein thioesterases 1 and 2 (APT1 and APT2) reverse S-acylation, a potential regulator of systemic glucose metabolism in mammals. Palmitoylation proteomics in liver-specific knockout mice shows that APT1 predominates over APT2, primarily depalmitoylating mitochondrial proteins, including proteins linked to glutamine metabolism. miniTurbo-facilitated determination of the protein-protein proximity network of APT1 and APT2 in HepG2 cells reveals APT proximity networks encompassing mitochondrial proteins including the major translocases Tomm20 and Timm44. APT1 also interacts with Slc1a5 (ASCT2), the only glutamine transporter known to localize to mitochondria. High-fat-diet-fed male mice with dual (but not single) hepatic deletion of APT1 and APT2 have insulin resistance, fasting hyperglycemia, increased glutamine-driven gluconeogenesis, and decreased liver mass. These data suggest that APT1 and APT2 regulation of hepatic glucose metabolism and insulin signaling is functionally redundant. Identification of substrates and protein-protein proximity networks for APT1 and APT2 establishes a framework for defining mechanisms underlying metabolic disease.

Indexed as

ProteomeThiolester HydrolasesAnimalsGlucoseGlutamineLipidsLiverMaleMammalsMiceMitochondriaMitochondrial ProteinsGlucoseGlutamineLipidsMitochondrial ProteinsProteomeThiolester Hydrolasesacyl-protein thioesterase 1acyl-protein thioesterase 2CP: Metabolismgluconeogenesisglutamineinsulinliverpalmitoylationproximity labeling

Identifiers

PMID37925639
PMCPMC10872372
OpenAlexW4388335502

What Socratic holds

Textmetadata
LicenceCC BY-NC-ND
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the Socratic graph.