Evidence map›Paper›PMID 37953350›Full record

ArticleNucleic acids research2024

VEuPathDB: the eukaryotic pathogen, vector and host bioinformatics resource center in 2023.

Jorge Alvarez-Jarreta, Beatrice Amos, Cristina Aurrecoechea, Saikou Bah, Matthieu Barba, Ana Barreto, Evelina Y Basenko, Robert Belnap, Ann Blevins, Ulrike Böhme and 51 more

Abstract read
In one paragraph

Article in Nucleic acids research, 2024. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 167 papers.

0numbers the graph read from it
0cells of the map it votes in
167citing papers in PubMed
–field-weighted citation impact
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

167 citing papers in PubMed.

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  20. New hit compounds againstAntimicrobial agents and chemotherapy · 2026
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107 more citing papers are in PubMed but not listed here.

4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

61 authors.

Jorge Alvarez-JarretaEuropean Bioinformatics Institute, Hinxton CB10 1SD, UK.
Beatrice AmosInstitute of Systems, Molecular and Integrative Biology, University of Liverpool, Liverpool L69 7ZB, UK.
Cristina AurrecoecheaUniversity of Georgia, Athens, GA 30602, USA.
Saikou BahSchool of Infection and Immunity, University of Glasgow, Glasgow, UK.
Matthieu BarbaEuropean Bioinformatics Institute, Hinxton CB10 1SD, UK.
Ana BarretoUniversity of Pennsylvania, Philadelphia, PA 19104, USA.
Evelina Y BasenkoInstitute of Systems, Molecular and Integrative Biology, University of Liverpool, Liverpool L69 7ZB, UK.
Robert BelnapUniversity of Georgia, Athens, GA 30602, USA.
Ann BlevinsUniversity of Pennsylvania School of Veterinary Medicine, Philadelphia, PA 19104, USA.
Ulrike BöhmeUniversity of Georgia, Athens, GA 30602, USA.
John BrestelliUniversity of Pennsylvania, Philadelphia, PA 19104, USA.
Stuart BrownUniversity of Pennsylvania, Philadelphia, PA 19104, USA.
Danielle CallanUniversity of Pennsylvania, Philadelphia, PA 19104, USA.
Lahcen I CampbellEuropean Bioinformatics Institute, Hinxton CB10 1SD, UK.
George K ChristophidesImperial College London, South Kensington, London SW7 2BU, UK.
Kathryn CrouchSchool of Infection and Immunity, University of Glasgow, Glasgow, UK.ORCID 0000-0001-9310-4762
Helen R DavisonInstitute of Systems, Molecular and Integrative Biology, University of Liverpool, Liverpool L69 7ZB, UK.
Jeremy D DeBarryUniversity of Georgia, Athens, GA 30602, USA.
Richard DemkoUniversity of Pennsylvania, Philadelphia, PA 19104, USA.
Ryan DohertyUniversity of Pennsylvania, Philadelphia, PA 19104, USA.
Yikun DuanUniversity of Pennsylvania, Philadelphia, PA 19104, USA.
Walter DundoreUniversity of Georgia, Athens, GA 30602, USA.
Sarah DyerEuropean Bioinformatics Institute, Hinxton CB10 1SD, UK.
Dave FalkeUniversity of Georgia, Athens, GA 30602, USA.
Steve FischerUniversity of Pennsylvania, Philadelphia, PA 19104, USA.
Bindu GajriaUniversity of Pennsylvania, Philadelphia, PA 19104, USA.
Daniel GaldiUniversity of Pennsylvania, Philadelphia, PA 19104, USA.
Gloria I Giraldo-CalderónUniversity of Notre Dame, Notre Dame, IN 46556, USA.ORCID 0000-0003-0598-0143
Omar S HarbUniversity of Pennsylvania, Philadelphia, PA 19104, USA.ORCID 0000-0003-4446-6200
Elizabeth HarperUniversity of Pennsylvania, Philadelphia, PA 19104, USA.
Danica HelbUniversity of Pennsylvania, Philadelphia, PA 19104, USA.
Connor HowingtonUniversity of Notre Dame, Notre Dame, IN 46556, USA.
Sufen HuUniversity of Pennsylvania, Philadelphia, PA 19104, USA.
Jay HumphreyUniversity of Georgia, Athens, GA 30602, USA.
John IodiceUniversity of Pennsylvania, Philadelphia, PA 19104, USA.
Andrew JonesInstitute of Systems, Molecular and Integrative Biology, University of Liverpool, Liverpool L69 7ZB, UK.ORCID 0000-0001-6118-9327
John JudkinsUniversity of Pennsylvania, Philadelphia, PA 19104, USA.
Sarah A KellyImperial College London, South Kensington, London SW7 2BU, UK.
Jessica C KissingerUniversity of Georgia, Athens, GA 30602, USA.
Nupur KitturUniversity of Georgia, Athens, GA 30602, USA.ORCID 0009-0009-8439-9453
Dae Kun KwonUniversity of Notre Dame, Notre Dame, IN 46556, USA.
Kristopher LamoureuxUniversity of Georgia, Athens, GA 30602, USA.
Wei LiUniversity of Pennsylvania, Philadelphia, PA 19104, USA.
Disha LodhaEuropean Bioinformatics Institute, Hinxton CB10 1SD, UK.
Robert M MacCallumImperial College London, South Kensington, London SW7 2BU, UK.
Gareth MaslenImperial College London, South Kensington, London SW7 2BU, UK.
Mary Ann McDowellUniversity of Notre Dame, Notre Dame, IN 46556, USA.
Jeremy MyersUniversity of Pennsylvania, Philadelphia, PA 19104, USA.
Mustafa Veysi NuralUniversity of Georgia, Athens, GA 30602, USA.
David S RoosUniversity of Pennsylvania, Philadelphia, PA 19104, USA.
Samuel S C RundUniversity of Notre Dame, Notre Dame, IN 46556, USA.ORCID 0000-0002-1701-7787
Achchuthan ShanmugasundramInstitute of Systems, Molecular and Integrative Biology, University of Liverpool, Liverpool L69 7ZB, UK.
Vasily SitnikEuropean Bioinformatics Institute, Hinxton CB10 1SD, UK.
Drew SpruillUniversity of Georgia, Athens, GA 30602, USA.
David StarnsInstitute of Systems, Molecular and Integrative Biology, University of Liverpool, Liverpool L69 7ZB, UK.
Sheena Shah TomkoUniversity of Pennsylvania, Philadelphia, PA 19104, USA.
Haiming WangUniversity of Georgia, Athens, GA 30602, USA.
Susanne WarrenfeltzUniversity of Georgia, Athens, GA 30602, USA.ORCID 0000-0002-9789-8878
Robert WieckUniversity of Notre Dame, Notre Dame, IN 46556, USA.
Paul A WilkinsonInstitute of Systems, Molecular and Integrative Biology, University of Liverpool, Liverpool L69 7ZB, UK.
Jie ZhengUniversity of Pennsylvania, Philadelphia, PA 19104, USA.

Funding

Bioinformatics Resource Centers for Infectious Diseases: Tickborne Diseases Activities 75N93019C00077 · NIAID · UNIVERSITY OF PENNSYLVANIA · PI ROOS, DAVID · 2019 to 2023
$30.8M
HHS 75N93019C00077NIAID NIH HHS 75N93019C00077NIH HHSWellcome TrustWellcome Trust 218 288/Z/19/Z
6 · The paper itself

Abstract

The Eukaryotic Pathogen, Vector and Host Informatics Resource (VEuPathDB, https://veupathdb.org) is a Bioinformatics Resource Center funded by the National Institutes of Health with additional funding from the Wellcome Trust. VEuPathDB supports >600 organisms that comprise invertebrate vectors, eukaryotic pathogens (protists and fungi) and relevant free-living or non-pathogenic species or hosts. Since 2004, VEuPathDB has analyzed omics data from the public domain using contemporary bioinformatic workflows, including orthology predictions via OrthoMCL, and integrated the analysis results with analysis tools, visualizations, and advanced search capabilities. The unique data mining platform coupled with >3000 pre-analyzed data sets facilitates the exploration of pertinent omics data in support of hypothesis driven research. Comparisons are easily made across data sets, data types and organisms. A Galaxy workspace offers the opportunity for the analysis of private large-scale datasets and for porting to VEuPathDB for comparisons with integrated data. The MapVEu tool provides a platform for exploration of spatially resolved data such as vector surveillance and insecticide resistance monitoring. To address the growing body of omics data and advances in laboratory techniques, VEuPathDB has added several new data types, searches and features, improved the Galaxy workspace environment, redesigned the MapVEu interface and updated the infrastructure to accommodate these changes.

Indexed as

Computational BiologyEukaryotaAnimalsDatabases, FactualInvertebrates

Identifiers

PMID37953350
PMCPMC10767879

What Socratic holds

Textmetadata
LicenceCC BY
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the Socratic graph.