Evidence map›Paper›PMID 37957263›Full record

ArticleScientific reports2023

Comparative genomics and genome-wide SNPs of endangered Eld's deer provide breeder selection for inbreeding avoidance.

Vichayanee Pumpitakkul, Wanna Chetruengchai, Chalurmpon Srichomthong, Chureerat Phokaew, Wirulda Pootakham, Chutima Sonthirod, Wanapinun Nawae, Sissades Tongsima, Pongsakorn Wangkumhang, Alisa Wilantho and 17 more

Open access · goldAbstract read
In one paragraph

Article in Scientific reports, 2023. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 6 papers.

0numbers the graph read from it
0cells of the map it votes in
6citing papers in PubMed
2.5field-weighted citation impact, top 10% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

6 citing papers in PubMed, 8 citations in OpenAlex.

  1. Article
  2. Article
  3. Molecular detection and characterization of haemoparasites in captive tigers (Current research in parasitology & vector-borne diseases · 2025
    Article
  4. Article
  5. Article
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4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

27 authors at 9 institutions in 2 countries.

Vichayanee Pumpitakkul *Biochemistry Unit, Department of Physiology, Faculty of Veterinary Science, Chulalongkorn University, Bangkok, 10330, Thailand.
Wanna Chetruengchai *Center of Excellence for Medical Genomics, Medical Genomics Cluster, Department of Pediatrics, Faculty of Medicine, Chulalongkorn University, Bangkok, 10330, Thailand.
Chalurmpon SrichomthongCenter of Excellence for Medical Genomics, Medical Genomics Cluster, Department of Pediatrics, Faculty of Medicine, Chulalongkorn University, Bangkok, 10330, Thailand.
Chureerat PhokaewCenter of Excellence for Medical Genomics, Medical Genomics Cluster, Department of Pediatrics, Faculty of Medicine, Chulalongkorn University, Bangkok, 10330, Thailand.
Wirulda PootakhamNational Center for Genetic Engineering and Biotechnology, National Science and Technology Development Agency, Pathum Thani, 12120, Thailand.
Chutima SonthirodNational Center for Genetic Engineering and Biotechnology, National Science and Technology Development Agency, Pathum Thani, 12120, Thailand.
Wanapinun NawaeNational Center for Genetic Engineering and Biotechnology, National Science and Technology Development Agency, Pathum Thani, 12120, Thailand.
Sissades TongsimaNational Center for Genetic Engineering and Biotechnology, National Science and Technology Development Agency, Pathum Thani, 12120, Thailand.
Pongsakorn WangkumhangNational Center for Genetic Engineering and Biotechnology, National Science and Technology Development Agency, Pathum Thani, 12120, Thailand.
Alisa WilanthoNational Center for Genetic Engineering and Biotechnology, National Science and Technology Development Agency, Pathum Thani, 12120, Thailand.
Yongchai UtaraZoological Park Organization of Thailand, Animal Conservation and Research Institute, Bangkok, 10800, Thailand.
Ampika ThongpakdeeZoological Park Organization of Thailand, Animal Conservation and Research Institute, Bangkok, 10800, Thailand.
Saowaphang SanannuZoological Park Organization of Thailand, Animal Conservation and Research Institute, Bangkok, 10800, Thailand.
Umaporn MaikaewKhao Kheow Open Zoo, Zoological Park Organization of Thailand, Chonburi, 20110, Thailand.
Suphattharaphonnaphan KhuntaweeUbon Ratchathani Zoo, Zoological Park Organization of Thailand, Ubon Ratchathani District, Ubon Ratchathani, 34000, Thailand.
Wirongrong ChangpetchNakhon Ratchasima Zoo, Zoological Park Organization of Thailand, Nakhon Ratchasima, 30000, Thailand.
Phairot PhromwatHuai Kha Khaeng Wildlife Breeding Center, Department of National Parks, Wildlife and Plant Conservation, Uthai Thani, 61160, Thailand.
Kacharin RaschasinChulabhorn Wildlife Breeding Center, Department of National Parks, Wildlife and Plant Conservation, Sisaket, 33140, Thailand.
Phunyaphat SarnkhaeveerakulBanglamung Wildlife Breeding Center, Department of National Parks, Wildlife and Plant Conservation, Chonburi, 20150, Thailand.
Pannawat SupapannachartBiochemistry Unit, Department of Physiology, Faculty of Veterinary Science, Chulalongkorn University, Bangkok, 10330, Thailand.
Wannapol ButhasaneBiochemistry Unit, Department of Physiology, Faculty of Veterinary Science, Chulalongkorn University, Bangkok, 10330, Thailand.
Budhan S PukazhenthiCenter for Species Survival, Smithsonian Conservation Biology Institute, National Zoological Park, Front Royal, VA, 22630, USA.
Klaus-Peter KoepfliCenter for Species Survival, Smithsonian Conservation Biology Institute, National Zoological Park, Front Royal, VA, 22630, USA.
Prapat SuriyapholOffice for Research and Development, Faculty of Medicine, Siriraj Hospital, Mahidol University, Bangkok, 10700, Thailand.
Sithichoke TangphatsornruangNational Center for Genetic Engineering and Biotechnology, National Science and Technology Development Agency, Pathum Thani, 12120, Thailand. Gunnaporn.V@chula.ac.th.
Gunnaporn SuriyapholBiochemistry Unit, Department of Physiology, Faculty of Veterinary Science, Chulalongkorn University, Bangkok, 10330, Thailand. sithichoke.tan@biotec.or.th.
Vorasuk ShotelersukCenter of Excellence for Medical Genomics, Medical Genomics Cluster, Department of Pediatrics, Faculty of Medicine, Chulalongkorn University, Bangkok, 10330, Thailand.
Zoological Park Organization · THChulalongkorn University · THNational Center for Genetic Engineering and Biotechnology · THNational Science and Technology Development Agency · THKing Chulalongkorn Memorial Hospital · THNational Zoological Park · USSiriraj Hospital · THSmithsonian Conservation Biology Institute · USThai Red Cross Society · TH

Funding

No grant is acknowledged in the PubMed record.

6 · The paper itself

Abstract

Eld's deer, a conserved wildlife species of Thailand, is facing inbreeding depression, particularly in the captive Siamese Eld's deer (SED) subspecies. In this study, we constructed genomes of a male SED and a male Burmese Eld's deer (BED), and used genome-wide single nucleotide polymorphisms to evaluate the genetic purity and the inbreeding status of 35 SED and 49 BED with limited pedigree information. The results show that these subspecies diverged approximately 1.26 million years ago. All SED were found to be purebred. A low proportion of admixed SED genetic material was observed in some BED individuals. Six potential breeders from male SED with no genetic relation to any female SED and three purebred male BED with no relation to more than 10 purebred female BED were identified. This study provides valuable insights about Eld's deer populations and appropriate breeder selection in efforts to repopulate this endangered species while avoiding inbreeding.

Indexed as

DeerPolymorphism, Single NucleotideAnimalsEndangered SpeciesFemaleGenomicsHumansInbreedingMale

Identifiers

PMID37957263
PMCPMC10643696
OpenAlexW4388622784

What Socratic holds

Textmetadata
LicenceCC BY
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the Socratic graph.