Evidence map›Paper›PMID 37963464›Full record

ArticleCell reports methods2023

A versatile pumpless multi-channel fluidics system for maintenance and real-time functional assessment of tissue and cells.

Varun Kamat, Matthew K Grumbine, Khang Bao, Kedar Mokate, Gamal Khalil, Daniel Cook, Brandon Clearwater, Richard Hirst, Jarrod Harman, Myriam Boeck and 12 more

Abstract read
In one paragraph

Article in Cell reports methods, 2023. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 11 papers.

0numbers the graph read from it
0cells of the map it votes in
11citing papers in PubMed
–field-weighted citation impact
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

11 citing papers in PubMed.

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4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

22 authors.

Varun KamatUniversity of Washington Medicine Diabetes Institute, University of Washington, Seattle, WA 98109, USA.
Matthew K GrumbineEnTox Sciences, Inc., Mercer Island, WA 98040, USA.
Khang BaoEnTox Sciences, Inc., Mercer Island, WA 98040, USA.
Kedar MokateUniversity of Washington Medicine Diabetes Institute, University of Washington, Seattle, WA 98109, USA.
Gamal KhalilEnTox Sciences, Inc., Mercer Island, WA 98040, USA.
Daniel CookEnTox Sciences, Inc., Mercer Island, WA 98040, USA.
Brandon ClearwaterTechnical Assembly Service Corporation, Seattle, WA 98109, USA.
Richard HirstTechnical Assembly Service Corporation, Seattle, WA 98109, USA.
Jarrod HarmanDepartment of Ophthalmology, Boston Children's Hospital, Harvard Medical School, Boston, MA 02115, USA.
Myriam BoeckDepartment of Ophthalmology, Boston Children's Hospital, Harvard Medical School, Boston, MA 02115, USA; Eye Center, Medical Center, Faculty of Medicine, University of Freiburg, Freiburg im Breisgau, Germany.
Zhongjie FuDepartment of Ophthalmology, Boston Children's Hospital, Harvard Medical School, Boston, MA 02115, USA.
Lois E H SmithDepartment of Ophthalmology, Boston Children's Hospital, Harvard Medical School, Boston, MA 02115, USA.
Moloy GoswamiDepartment of Ophthalmology and Visual Sciences, University of Michigan, Ann Arbor, MI 48105, USA.
Thomas J WubbenDepartment of Ophthalmology and Visual Sciences, University of Michigan, Ann Arbor, MI 48105, USA.
Emily M WalkerDepartment of Internal Medicine, University of Michigan, Ann Arbor, MI 98195, USA.
Jie ZhuDepartment of Internal Medicine, University of Michigan, Ann Arbor, MI 98195, USA.
Scott A SoleimanpourDepartment of Internal Medicine, University of Michigan, Ann Arbor, MI 98195, USA.
Jarrad M ScarlettUniversity of Washington Medicine Diabetes Institute, University of Washington, Seattle, WA 98109, USA; Department of Pediatric Gastroenterology and Hepatology, Seattle Children's Hospital, Seattle, WA 98145, USA.
Brian M RobbingsUniversity of Washington Medicine Diabetes Institute, University of Washington, Seattle, WA 98109, USA; Department of Biochemistry, University of Washington, Seattle, WA 98109, USA.
Daniel HassDepartment of Biochemistry, University of Washington, Seattle, WA 98109, USA.
James B HurleyDepartment of Biochemistry, University of Washington, Seattle, WA 98109, USA.
Ian R SweetUniversity of Washington Medicine Diabetes Institute, University of Washington, Seattle, WA 98109, USA; EnTox Sciences, Inc., Mercer Island, WA 98040, USA. Electronic address: isweet@uw.edu.

Funding

Regional Pilot And Feasibility Study Grants ProgramP30DK020572 · NIDDK · UNIVERSITY OF MICHIGAN AT ANN ARBOR · PI Scott Soleimanpour · 2013 to 2026
$24.3M
VIVARIUM MODULEP30EY007003 · NEI · UNIVERSITY OF MICHIGAN AT ANN ARBOR · PI David Antonetti · 1987 to 2026
$17.6M
Dietary control of angiogenesis in retinopathy modelsR01EY017017 · NEI · BOSTON CHILDREN'S HOSPITAL · PI Zhongjie Fu, Lois Smith · 2006 to 2026
$11.8M
ROD AND CONE RESPONSE CHARACTERISTICSR01EY006641 · NEI · UNIVERSITY OF WASHINGTON · PI JAMES Bryant HURLEY · 1986 to 2026
$10.2M
Genetic Analysis and Manipulation Core (GAEC)P50HD105351 · NICHD · BOSTON CHILDREN'S HOSPITAL · PI SCOTT Loren POMEROY, MUSTAFA SAHIN · 2021 to 2026
$9.4M
Control of Photoreceptor MetabolismR01EY017863 · NEI · UNIVERSITY OF WASHINGTON · PI JAMES Bryant HURLEY · 2007 to 2026
$6.4M
Mouse Neurodevelopmental Behavior CoreU54HD090255 · NICHD · BOSTON CHILDREN'S HOSPITAL · PI SAHIN, MUSTAFA · 2016 to 2020
$5.2M
Type 2 diabetes risk variant effects on mitochondrial (patho)physiologyR01DK136671 · NIDDK · JACKSON LABORATORY · PI Scott Soleimanpour, Michael Lee Stitzel · 2023 to 2026
$3.0M
Functional interaction of transcriptional regulators in endocrine lineage specificationR01DK135032 · NIDDK · UNIVERSITY OF PENNSYLVANIA · PI Maureen A Gannon, DORIS A STOFFERS · 2023 to 2026
$2.8M
A Stress-Induced Vicious Cycle In The Development of T1DU01DK127747 · NIDDK · UNIVERSITY OF MICHIGAN AT ANN ARBOR · PI ARVAN, PETER, SATIN, LESLIE S. · 2020 to 2023
$2.8M
Control of insulin secretion by mitochondrial fusionR01DK135268 · NIDDK · UNIVERSITY OF MICHIGAN AT ANN ARBOR · PI Brett A Kaufman, Scott Soleimanpour · 2023 to 2026
$2.4M
Serine control of retinal neovascularization in retinopathyR01EY032492 · NEI · BOSTON CHILDREN'S HOSPITAL · PI FU, ZHONGJIE · 2021 to 2025
$2.2M
BLRD VA I01 BX004444NEI NIH HHS K08 EY031757NEI NIH HHS P30 EY007003NEI NIH HHS R01 EY006641NEI NIH HHS R01 EY017017NEI NIH HHS R01 EY017863NEI NIH HHS R01 EY030904NEI NIH HHS R01 EY032492NEI NIH HHS R21 EY032597NICHD NIH HHS P50 HD105351NICHD NIH HHS U54 HD090255NIDDK NIH HHS K01 DK133533NIDDK NIH HHS P30 DK020572NIDDK NIH HHS R01 DK108921NIDDK NIH HHS R01 DK135032NIDDK NIH HHS R01 DK135268NIDDK NIH HHS R01 DK136671NIDDK NIH HHS R03 DK128383NIDDK NIH HHS U01 DK127747NIGMS NIH HHS R01 GM148741
6 · The paper itself

Abstract

To address the needs of the life sciences community and the pharmaceutical industry in pre-clinical drug development to both maintain and continuously assess tissue metabolism and function with simple and rapid systems, we improved on the initial BaroFuse to develop it into a fully functional, pumpless, scalable multi-channel fluidics instrument that continuously measures changes in oxygen consumption and other endpoints in response to test compounds. We and several other laboratories assessed it with a wide range of tissue types including retina, pancreatic islets, liver, and hypothalamus with both aqueous and gaseous test compounds. The setup time was less than an hour for all collaborating groups, and there was close agreement between data obtained from the different laboratories. This easy-to-use system reliably generates real-time metabolic and functional data from tissue and cells in response to test compounds that will address a critical need in basic and applied research.

Indexed as

Islets of LangerhansGasesInsulin SecretionOxygenOxygen ConsumptionGasesOxygenBaroFuseCP: BiotechnologyCP: Metabolismendothelial cellshypothalamushypoxiaisletslactate productionliveroxygen consumptionperifusionretina

Identifiers

PMID37963464
PMCPMC10694526

What Socratic holds

Textmetadata
LicenceCC BY-NC-ND
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the Socratic graph.