Evidence map›Paper›PMID 38000658›Full record

ArticleThe Journal of biological chemistry2023

Association of DDX5/p68 protein with the upstream erythroid enhancer element (EHS1) of the gene encoding the KLF1 transcription factor.

Xiaoyong Chen, Sanjana Pillay, Felix Lohmann, James J Bieker

Open access · goldAbstract read
In one paragraph

Article in The Journal of biological chemistry, 2023. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 5 papers.

0numbers the graph read from it
0cells of the map it votes in
5citing papers in PubMed
0.6field-weighted citation impact, top 29% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

5 citing papers in PubMed, 4 citations in OpenAlex.

  1. Article
  2. Orai1 acts as a novel CaExperimental & molecular medicine · 2026
    Article
  3. Article
  4. Review
  5. Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

4 authors at 2 institutions in 1 country.

Xiaoyong ChenDepartment of Cell, Developmental, and Regenerative Biology, Mount Sinai School of Medicine, New York, New York, USA.
Sanjana PillayDepartment of Cell, Developmental, and Regenerative Biology, Mount Sinai School of Medicine, New York, New York, USA.
Felix LohmannDepartment of Cell, Developmental, and Regenerative Biology, Mount Sinai School of Medicine, New York, New York, USA.
James J BiekerDepartment of Cell, Developmental, and Regenerative Biology, Mount Sinai School of Medicine, New York, New York, USA; Black Familly Stem Cell Institute, Mount Sinai School of Medicine, New York, New York, USA; Tisch Cancer Institute, Mount Sinai School of Medicine, New York, New York, USA; Mindich Child Health and Development Institute, Mount Sinai School of Medicine, New York, New York, USA. Electronic address: james.bieker@mssm.edu.
Icahn School of Medicine at Mount Sinai · USMount Sinai Hospital · US

Funding

Function of Putative Determinant in HematopoiesisR01DK046865 · NIDDK · MOUNT SINAI SCHOOL OF MEDICINE OF NYU · PI JAMES J BIEKER · 1993 to 2026
$11.2M
New York Consortium for Interdisciplinary Training in Kidney, Urological and Hematological Research (NYC Train KUHR)TL1DK136048 · NIDDK · ALBERT EINSTEIN COLLEGE OF MEDICINE · PI JONATHAN M. BARASCH, Wadie F Bahou · 2022 to 2026
$3.8M
HEMATOPOIETIC STEM CELL COMMITMENT--MOLECULAR REGULATIONR01DK048721 · NIDDK · MOUNT SINAI SCHOOL OF MEDICINE OF NYU · PI BIEKER, JAMES J · 1996 to 2004
$1.0M
NIDDK NIH HHS R01 DK046865NIDDK NIH HHS R01 DK048721NIDDK NIH HHS TL1 DK136048
6 · The paper itself

Abstract

EKLF/KLF1 is an essential transcription factor that plays a global role in erythroid transcriptional activation. Regulation of KLF1 is of interest, as it displays a highly restricted expression pattern, limited to erythroid cells and its progenitors. Here we use biochemical affinity purification to identify the DDX5/p68 protein as an activator of KLF1 by virtue of its interaction with the erythroid-specific DNAse hypersensitive site upstream enhancer element (EHS1). We further show that this protein associates with DEK and CTCF. We postulate that the range of interactions of DDX5/p68 with these and other proteins known to interact with this element render it part of the enhanseosome complex critical for optimal expression of KLF1 and enables the formation of a proper chromatin configuration at the Klf1 locus. These individual interactions provide quantitative contributions that, in sum, establish the high-level activity of the Klf1 promoter and suggest they can be selectively manipulated for clinical benefit.

Indexed as

DEAD-box RNA HelicasesEnhancer Elements, GeneticKruppel-Like Transcription FactorsErythropoiesisGene Expression RegulationDEAD-box RNA Helicaseserythroid Kruppel-like factorKruppel-Like Transcription Factorsbiochemical affinity isolationCTCFDEKerythropoiesistranscription factor

Identifiers

PMID38000658
PMCPMC10750184
OpenAlexW4388927349

What Socratic holds

Textmetadata
LicenceCC BY-NC-ND
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the Socratic graph.