Evidence map›Paper›PMID 38010586›Full record

ArticleCancer causes & control : CCC2024

Blood DNA methylation and liver cancer in American Indians: evidence from the Strong Heart Study.

Monique Slowly, Arce Domingo-Relloso, Regina M Santella, Karin Haack, Daniele M Fallin, Mary Beth Terry, Dorothy A Rhoades, Miguel Herreros-Martinez, Esther Garcia-Esquinas, Shelley A Cole and 3 more

Open access · hybridAbstract read
In one paragraph

Article in Cancer causes & control : CCC, 2024. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 5 papers.

0numbers the graph read from it
0cells of the map it votes in
5citing papers in PubMed
0.6field-weighted citation impact, top 29% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

5 citing papers in PubMed, 4 citations in OpenAlex.

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4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

13 authors at 9 institutions in 2 countries.

Monique SlowlyDepartment of Environmental Health Sciences, Columbia University Mailman School of Public Health, New York, USA.
Arce Domingo-RellosoDepartment of Environmental Health Sciences, Columbia University Mailman School of Public Health, New York, USA.
Regina M SantellaDepartment of Environmental Health Sciences, Columbia University Mailman School of Public Health, New York, USA.
Karin HaackPopulation Health Program, Texas Biomedical Research Institute, San Antonio, TX, USA.
Daniele M FallinDepartment of Mental Health, Johns Hopkins University, Baltimore, MD, USA.
Mary Beth TerryHerbert Irving Comprehensive Cancer Center, Columbia University Medical Center, New York, NY, USA.
Dorothy A RhoadesDepartment of Medicine, Stephenson Cancer Center, University of Oklahoma Health Sciences, Oklahoma City, OK, USA.
Miguel Herreros-MartinezBioinformatics Unit, Institute for Biomedical Research INCLIVA, Valencia, Spain.
Esther Garcia-EsquinasUniversidad Autónoma de Madrid, Madrid, Spain.
Shelley A ColePopulation Health Program, Texas Biomedical Research Institute, San Antonio, TX, USA.
Maria Tellez-PlazaDepartment of Chronic Diseases Epidemiology, National Center for Epidemiology, Carlos III Health Institute, Madrid, Spain.
Ana Navas-AcienDepartment of Environmental Health Sciences, Columbia University Mailman School of Public Health, New York, USA.
Hui-Chen WuDepartment of Environmental Health Sciences, Columbia University Mailman School of Public Health, New York, USA. hw2057@cumc.columbia.edu.
Columbia University · USTexas Biomedical Research Institute · USCentro de Investigación Biomédica en Red de Epidemiología y Salud Pública · ESColumbia University Irving Medical Center · USINCLIVA Health Research Institute · ESInstituto de Salud Carlos III · ESJohns Hopkins University · USUniversitat de València · ESUniversity of Oklahoma Health Sciences Center · US

Funding

The Southwest National Primate Research Center Supplement- Infrastructure improvements of ABSL2 holding areasP51OD011133 · OD · TEXAS BIOMEDICAL RESEARCH INSTITUTE · PI Larry S. Schlesinger · 2012 to 2026
$129.7M
True Metal fac coreP30ES009089 · NIEHS · COLUMBIA UNIVERSITY HEALTH SCIENCES · PI Steven N. Chillrud · 1998 to 2026
$44.7M
STRONG HEART STUDY (SHS): OUHSC COORDINATING CENTER - TASK AREA B (B.1 AND B.3)75N92019D00027 · NHLBI · UNIVERSITY OF OKLAHOMA HLTH SCIENCES CTR · PI ZHANG, YING · 2019 to 2025
$15.5M
Research Experience and Training Coordination CoreP42ES033719 · NIEHS · COLUMBIA UNIVERSITY HEALTH SCIENCES · PI Ana Navas-Acien · 2022 to 2026
$11.9M
STRONG HEART STUDY (SHS)-MISSOURI BREAKS INDUSTRIES RESEARCH, INC.- FIELD CENTER (FC) TASK AREA B (B.1 AND B.3)75N92019D00029 · NHLBI · MISSOURI BREAKS RESEARCH, INC. · PI FRETTS, AMANDA MAE · 2019 to 2025
$7.5M
STRONG HEART STUDY (SHS)- UNIVERSITY OF OKLAHOMA-FIELD CENTER (FC), TASK AREA B.3, YEAR 375N92019D00028 · NHLBI · UNIVERSITY OF OKLAHOMA HLTH SCIENCES CTR · PI ALI, TAUQEER · 2019 to 2025
$6.5M
STRONG HEART STUDY (SHS)- MEDSTAR HEALTH RESEARCH INSTITUTE (MHRI) FIELD CENTER -SUBTASK AREA B.2 PHASE VII EXAM AND EXAM CLOSEOUT.75N92019D00030 · NHLBI · MEDSTAR HEALTH RESEARCH INSTITUTE · PI UMANS, JASON G · 2019 to 2025
$5.2M
The Epitranscriptome as a Novel Mechanism of Arsenic-Induced Diabetes.R01ES032638 · NIEHS · COLUMBIA UNIVERSITY HEALTH SCIENCES · PI KUPSCO, ALLISON, MASON, CHRISTOPHER EDWARD · 2021 to 2025
$3.9M
Arsenic Exposure, Cardiovascular Disease and Diabetes in Native AmericansR01HL090863 · NHLBI · JOHNS HOPKINS UNIVERSITY · PI NAVAS-ACIEN, ANA · 2008 to 2011
$3.1M
Arsenic Exposure, Genetic Determinants and Diabetes Risk in a Family StudyR01ES021367 · NIEHS · JOHNS HOPKINS UNIVERSITY · PI NAVAS-ACIEN, ANA, VAIDYA, DHANANJAY MADHUKAR · 2012 to 2015
$2.4M
Arsenic, Epigenetics and Incident Cardiovascular Disease in American IndiansR01ES025216 · NIEHS · JOHNS HOPKINS UNIVERSITY · PI FALLIN, M DANIELE, NAVAS-ACIEN, ANA · 2015 to 2018
$2.2M
CVD in American Indians The Dakota Field CenterR01HL109315 · NHLBI · MISSOURI BREAKS RESEARCH, INC. · PI JOLLY, STACEY · 2013 to 2018
$1.9M
NHLBI NIH HHS 75N92019D00027NHLBI NIH HHS 75N92019D00027, 75N92019D00028, 75N92019D00029 and 75N92019D00030NHLBI NIH HHS 75N92019D00028NHLBI NIH HHS 75N92019D00029NHLBI NIH HHS 75N92019D00030NHLBI NIH HHS R01 HL090863NHLBI NIH HHS R01 HL109315NIEHS NIH HHS P30 ES009089NIEHS NIH HHS P42 ES033719NIEHS NIH HHS R01 ES021367NIEHS NIH HHS R01 ES025216NIEHS NIH HHS R01 ES032638NIEHS NIH HHS R25 ES025505NIEHS NIH HHS R25ES025505, R01ES032638, R01ES021367, R01ES025216, P42ES033719, P30ES009089NIH HHS P51 OD011133
6 · The paper itself

Abstract

purposeLiver cancer incidence among American Indians/Alaska Natives has risen over the past 20 years. Peripheral blood DNA methylation may be associated with liver cancer and could be used as a biomarker for cancer risk. We evaluated the association of blood DNA methylation with risk of liver cancer.

methodsWe conducted a prospective cohort study in 2324 American Indians, between age 45 and 75 years, from Arizona, Oklahoma, North Dakota and South Dakota who participated in the Strong Heart Study between 1989 and 1991. Liver cancer deaths (n = 21) were ascertained using death certificates obtained through 2017. The mean follow-up duration (SD) for non-cases was 25.1 (5.6) years and for cases, 11.0 (8.8) years. DNA methylation was assessed from blood samples collected at baseline using MethylationEPIC BeadChip 850 K arrays. We used Cox regression models adjusted for age, sex, center, body mass index, low-density lipoprotein cholesterol, smoking, alcohol consumption, and immune cell proportions to examine the associations.

resultsWe identified 9 CpG sites associated with liver cancer. cg16057201 annotated to MRFAP1) was hypermethylated among cases vs. non-cases (hazard ratio (HR) for one standard deviation increase in methylation was 1.25 (95% CI 1.14, 1.37). The other eight CpGs were hypomethylated and the corresponding HRs (95% CI) ranged from 0.58 (0.44, 0.75) for cg04967787 (annotated to PPRC1) to 0.77 (0.67, 0.88) for cg08550308. We also assessed 7 differentially methylated CpG sites associated with liver cancer in previous studies. The adjusted HR for cg15079934 (annotated to LPS1) was 1.93 (95% CI 1.10, 3.39).

conclusionsBlood DNA methylation may be associated with liver cancer mortality and may be altered during the development of liver cancer.

Indexed as

Indians, North AmericanLiver NeoplasmsAgedAmerican Indian or Alaska NativeDNA MethylationHumansIntracellular Signaling Peptides and ProteinsMiddle AgedNuclear ProteinsProspective StudiesTranscription FactorsIntracellular Signaling Peptides and ProteinsMRFAP1 protein, humanNuclear Proteinsperoxisome-proliferator-activated receptor-gamma coactivator-1Transcription FactorsAmerican IndianCirculating leukocyte subtypesCpG siteDNA methylationLiver cancerStrong Heart Study

Identifiers

PMID38010586
PMCPMC10960679
OpenAlexW4389051230

What Socratic holds

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Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the Socratic graph.