Evidence map›Paper›PMID 38038974›Full record

ArticleThe Biochemical journal2023

A guide to ERK dynamics, part 1: mechanisms and models.

Abhineet Ram, Devan Murphy, Nicholaus DeCuzzi, Madhura Patankar, Jason Hu, Michael Pargett, John G Albeck

Abstract read
In one paragraph

Article in The Biochemical journal, 2023. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 18 papers.

0numbers the graph read from it
0cells of the map it votes in
18citing papers in PubMed
–field-weighted citation impact
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

18 citing papers in PubMed.

  1. ERK autoinhibition mechanism informs a drug combination strategy.Protein science : a publication of the Protein Society · 2026
    Article
  2. Article
  3. Article
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  5. Two novel red-FRET ERK bosensors in the 670-720 nm range.Journal of biological engineering · 2025
    Article
  6. Article
  7. Review
  8. Review
  9. Article
  10. Article
  11. Article
  12. Article
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  14. Article
  15. A mechanosensitive circuit of FAK, ROCK, and ERK controls biomineral growth and morphology in the sea urchin embryo.Proceedings of the National Academy of Sciences of the United States of America · 2025
    Article
  16. Article
  17. Article
  18. Review
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

7 authors.

Abhineet RamDepartment of Molecular and Cellular Biology, University of California, Davis, U.S.A.
Devan MurphyDepartment of Molecular and Cellular Biology, University of California, Davis, U.S.A.
Nicholaus DeCuzziDepartment of Molecular and Cellular Biology, University of California, Davis, U.S.A.
Madhura PatankarDepartment of Molecular and Cellular Biology, University of California, Davis, U.S.A.
Jason HuDepartment of Molecular and Cellular Biology, University of California, Davis, U.S.A.
Michael PargettDepartment of Molecular and Cellular Biology, University of California, Davis, U.S.A.
John G AlbeckDepartment of Molecular and Cellular Biology, University of California, Davis, U.S.A.ORCID 0000-0003-2688-8653

Funding

Decoding temporal epithelial signaling programs to restore homeostasis in acute lung injuryR01HL151983 · NHLBI · UNIVERSITY OF CALIFORNIA AT DAVIS · PI ALBECK, JOHN G. · 2021 to 2024
$2.4M
Control of gene expression by dynamic metabolic oscillationsR35GM139621 · NIGMS · UNIVERSITY OF CALIFORNIA AT DAVIS · PI ALBECK, JOHN G. · 2021 to 2025
$1.9M
The role of dynamics in defining the limits of normal developmental signaling.R01GM115650 · NIGMS · UNIVERSITY OF CALIFORNIA AT DAVIS · PI ALBECK, JOHN G. · 2016 to 2021
$1.8M
NHLBI NIH HHS R01 HL151983NIGMS NIH HHS R01 GM115650NIGMS NIH HHS R35 GM139621
6 · The paper itself

Abstract

Extracellular signal-regulated kinase (ERK) has long been studied as a key driver of both essential cellular processes and disease. A persistent question has been how this single pathway is able to direct multiple cell behaviors, including growth, proliferation, and death. Modern biosensor studies have revealed that the temporal pattern of ERK activity is highly variable and heterogeneous, and critically, that these dynamic differences modulate cell fate. This two-part review discusses the current understanding of dynamic activity in the ERK pathway, how it regulates cellular decisions, and how these cell fates lead to tissue regulation and pathology. In part 1, we cover the optogenetic and live-cell imaging technologies that first revealed the dynamic nature of ERK, as well as current challenges in biosensor data analysis. We also discuss advances in mathematical models for the mechanisms of ERK dynamics, including receptor-level regulation, negative feedback, cooperativity, and paracrine signaling. While hurdles still remain, it is clear that higher temporal and spatial resolution provide mechanistic insights into pathway circuitry. Exciting new algorithms and advanced computational tools enable quantitative measurements of single-cell ERK activation, which in turn inform better models of pathway behavior. However, the fact that current models still cannot fully recapitulate the diversity of ERK responses calls for a deeper understanding of network structure and signal transduction in general.

Indexed as

Extracellular Signal-Regulated MAP KinasesSignal TransductionCell DifferentiationMAP Kinase Signaling SystemPhosphorylationExtracellular Signal-Regulated MAP Kinasesbiological networkscomputational modelsepidermal growth factor receptorextracellular signal-regulated kinasesmitogen-activated protein kinasesreceptor tyrosine kinases

Identifiers

PMID38038974
PMCPMC10754288

What Socratic holds

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LicenceCC BY
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Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the Socratic graph.