Evidence map›Paper›PMID 38060022›Full record

ArticleMicrobial ecology2023

Geographical Diversity of Proteomic Responses to Cold Stress in the Fungal Genus Pseudogymnoascus.

Nurlizah Abu Bakar, Benjamin Yii Chung Lau, Marcelo González-Aravena, Jerzy Smykla, Beata Krzewicka, Saiful Anuar Karsani, Siti Aisyah Alias

Open access · hybridAbstract read
In one paragraph

Article in Microbial ecology, 2023. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 5 papers.

0numbers the graph read from it
0cells of the map it votes in
5citing papers in PubMed
1.2field-weighted citation impact, top 20% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

5 citing papers in PubMed, 5 citations in OpenAlex.

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4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

7 authors at 5 institutions in 3 countries.

Nurlizah Abu BakarInstitute of Ocean and Earth Sciences, C308, Institute of Advanced Studies Building, Universiti Malaya, 50603, Kuala Lumpur, Malaysia.ORCID http://orcid.org/0000-0002-9238-5889
Benjamin Yii Chung LauAdvanced Biotechnology and Breeding Centre, Malaysian Palm Oil Board, No. 6, Persiaran Institusi, Bandar Baru Bangi, 43000, Kajang, Selangor, Malaysia.ORCID http://orcid.org/0000-0001-7211-8284
Marcelo González-AravenaInstituto Antártico Chileno, Plaza Muñoz Gamero, 1055, Punta Arenas, Chile.ORCID http://orcid.org/0000-0001-9986-9504
Jerzy SmyklaDepartment of Biodiversity, Institute of Nature Conservation, Polish Academy of Sciences, Mickiewicza 33, 31-120, Krakow, Poland.ORCID http://orcid.org/0000-0001-8228-6695
Beata KrzewickaW. Szafer Institute of Botany, Polish Academy of Sciences, Lubicz 46, 31-512, Kraków, Poland.ORCID http://orcid.org/0000-0002-9478-0911
Saiful Anuar KarsaniInstitute of Biological Sciences, Faculty of Science, Universiti Malaya, 50603, Kuala Lumpur, Malaysia.ORCID http://orcid.org/0000-0003-1617-9554
Siti Aisyah AliasInstitute of Ocean and Earth Sciences, C308, Institute of Advanced Studies Building, Universiti Malaya, 50603, Kuala Lumpur, Malaysia. saa@um.edu.my.ORCID http://orcid.org/0000-0002-6759-5745
University of Malaya · MYInstitute of Nature Conservation · PLInstituto Antártico Chileno · CLMalaysian Palm Oil Board · MYPolish Academy of Sciences · PL

Funding

Majlis Amanah Rakyat Postgraduate sponsorshipMinistry of Higher Education, Malaysia HICoE grant (IOES-2014G)Universiti Malaya UMRP (RP026A-18SUS)
6 · The paper itself

Abstract

In understanding stress response mechanisms in fungi, cold stress has received less attention than heat stress. However, cold stress has shown its importance in various research fields. The following study examined the cold stress response of six Pseudogymnoascus spp. isolated from various biogeographical regions through a proteomic approach. In total, 2541 proteins were identified with high confidence. Gene Ontology enrichment analysis showed diversity in the cold stress response pathways for all six Pseudogymnoascus spp. isolates, with metabolic and translation-related processes being prominent in most isolates. 25.6% of the proteins with an increase in relative abundance were increased by more than 3.0-fold. There was no link between the geographical origin of the isolates and the cold stress response of Pseudogymnoascus spp. However, one Antarctic isolate, sp3, showed a distinctive cold stress response profile involving increased flavin/riboflavin biosynthesis and methane metabolism. This Antarctic isolate (sp3) was also the only one that showed decreased phospholipid metabolism in cold stress conditions. This work will improve our understanding of the mechanisms of cold stress response and adaptation in psychrotolerant soil microfungi, with specific attention to the fungal genus Pseudogymnoascus.

Indexed as

AscomycotaCold-Shock ResponseAntarctic RegionsCold TemperatureProteomicsSoilSoil MicrobiologySoilCold adaptationFungal adaptationLipid metabolismMetabolic pathwaysMethane metabolismSoil microfungi

Identifiers

PMID38060022
PMCPMC10703952
OpenAlexW4389445440

What Socratic holds

Textmetadata
LicenceCC BY
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the Socratic graph.