Evidence map›Paper›PMID 38071267›Full record

ArticleTAG. Theoretical and applied genetics. Theoretische und angewandte Genetik2023

Sr65: a widely effective gene for stem rust resistance in wheat.

Michael Norman, Chunhong Chen, Hanif Miah, Mehran Patpour, Chris Sørensen, Mogens Hovmøller, Kerrie Forrest, Subodh Kumar, Pramod Prasad, Om Prakash Gangwar and 4 more

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Article in TAG. Theoretical and applied genetics. Theoretische und angewandte Genetik, 2023. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 3 papers.

0numbers the graph read from it
0cells of the map it votes in
3citing papers in PubMed
–field-weighted citation impact
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

3 citing papers in PubMed.

  1. Article
  2. Review
  3. Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

14 authors.

Michael NormanPlant Breeding Institute, School of Life and Environmental Sciences, Faculty of Science, The University of Sydney, 107 Cobbitty Road, Cobbitty, NSW, 2570, Australia.ORCID http://orcid.org/0000-0001-9838-883X
Chunhong ChenCommonwealth Scientific and Industrial Research Organization Agriculture and Food, Canberra, ACT, 2601, Australia.ORCID http://orcid.org/0000-0001-7813-2415
Hanif MiahPlant Breeding Institute, School of Life and Environmental Sciences, Faculty of Science, The University of Sydney, 107 Cobbitty Road, Cobbitty, NSW, 2570, Australia.
Mehran PatpourDepartment of Agroecology, Aarhus University, Forsøgsvej 1, 4200, Slagelse, Denmark.ORCID http://orcid.org/0000-0002-4914-2697
Chris SørensenDepartment of Agroecology, Aarhus University, Forsøgsvej 1, 4200, Slagelse, Denmark.
Mogens HovmøllerDepartment of Agroecology, Aarhus University, Forsøgsvej 1, 4200, Slagelse, Denmark.
Kerrie ForrestAgriculture Victoria, Department of Energy, Environment and Climate Action, AgriBio, Centre for AgriBioscience, 5 Ring Rd., Bundoora, VIC, 3083, Australia.
Subodh KumarIndian Council of Agricultural Research - Indian Institute of Wheat and Barley Research Regional Station, Flowerdale, Shimla, Himachal Pradesh, 171 002, India.
Pramod PrasadIndian Council of Agricultural Research - Indian Institute of Wheat and Barley Research Regional Station, Flowerdale, Shimla, Himachal Pradesh, 171 002, India.
Om Prakash GangwarIndian Council of Agricultural Research - Indian Institute of Wheat and Barley Research Regional Station, Flowerdale, Shimla, Himachal Pradesh, 171 002, India.
Subhash BhardwajIndian Council of Agricultural Research - Indian Institute of Wheat and Barley Research Regional Station, Flowerdale, Shimla, Himachal Pradesh, 171 002, India.ORCID http://orcid.org/0000-0002-4070-8412
Harbans BarianaPlant Breeding Institute, School of Life and Environmental Sciences, Faculty of Science, The University of Sydney, 107 Cobbitty Road, Cobbitty, NSW, 2570, Australia.ORCID http://orcid.org/0000-0003-4299-3912
Sambasivam PeriyannanCommonwealth Scientific and Industrial Research Organization Agriculture and Food, Canberra, ACT, 2601, Australia. sambasivam.periyannan@usq.edu.au.ORCID http://orcid.org/0000-0002-5421-2872
Urmil BansalPlant Breeding Institute, School of Life and Environmental Sciences, Faculty of Science, The University of Sydney, 107 Cobbitty Road, Cobbitty, NSW, 2570, Australia. urmil.bansal@sydney.edu.au.ORCID http://orcid.org/0000-0003-1119-4464

Funding

No grant is acknowledged in the PubMed record.

6 · The paper itself

Abstract

key messageSr65 in chromosome 1A of Indian wheat landrace Hango-2 is a potentially useful all-stage resistance gene that currently protects wheat from stem rust in Australia, India, Africa and Europe. Stem rust, caused by Puccinia graminis f. sp. tritici (Pgt), threatened global wheat production with the appearance of widely virulent races that included TTKSK and TTRTF. Indian landrace Hango-2 showed resistance to Pgt races in India and Australia. Screening of a Hango-2/Avocet 'S' (AvS) recombinant inbred line population identified two stem rust resistance genes, a novel gene (temporarily named as SrH2) from Hango-2 and Sr26 from AvS. A mapping population segregating for SrH2 alone was developed from two recombinant lines. SrH2 was mapped on the short arm of chromosome 1A, where it was flanked by KASP markers KASP_7944 (proximal) and KASP_12147 (distal). SrH2 was delimited to an interval of 1.8-2.3 Mb on chromosome arm 1AS. The failure to detect candidate genes through MutRenSeq and comparative genomic analysis with the pan-genome dataset indicated the necessity to generate a Hango-2 specific assembly for detecting the gene sequence linked with SrH2 resistance. MutRenSeq however enabled identification of SrH2-linked KASP marker sunCS_265. Markers KASP_12147 and sunCS_265 showed 92% and 85% polymorphism among an Australian cereal cultivar diversity panel and can be used for marker-assisted selection of SrH2 in breeding programs. The effectiveness of SrH2 against Pgt races from Europe, Africa, India, and Australia makes it a valuable resource for breeding stem rust-resistant wheat cultivars. Since no wheat-derived gene was previously located in chromosome arm 1AS, SrH2 represents a new locus and named as SR65.

Indexed as

BasidiomycotaTriticumAustraliaChromosome MappingDisease ResistancePlant BreedingPlant DiseasesPuccinia

Identifiers

What Socratic holds

Textmetadata
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the Socratic graph.