Evidence map›Paper›PMID 38075828›Full record

ArticleACS omega2023

MetaTox 2.0: Estimating the Biological Activity Spectra of Drug-like Compounds Taking into Account Probable Biotransformations.

Anastasia V Rudik, Alexander V Dmitriev, Alexey A Lagunin, Dmitry A Filimonov, Vladimir V Poroikov

Open access · goldAbstract read
In one paragraph

Article in ACS omega, 2023. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 2 papers.

0numbers the graph read from it
0cells of the map it votes in
2citing papers in PubMed
1.8field-weighted citation impact, top 12% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

2 citing papers in PubMed, 9 citations in OpenAlex.

  1. Article
  2. Review
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

5 authors at 2 institutions in 1 country.

Anastasia V RudikDepartment of Bioinformatics, Institute of Biomedical Chemistry, 10 Bldg. 8, Pogodinskaya Str., Moscow 119121, Russia.ORCID https://orcid.org/0000-0002-8916-9675
Alexander V DmitrievDepartment of Bioinformatics, Institute of Biomedical Chemistry, 10 Bldg. 8, Pogodinskaya Str., Moscow 119121, Russia.
Alexey A LaguninDepartment of Bioinformatics, Institute of Biomedical Chemistry, 10 Bldg. 8, Pogodinskaya Str., Moscow 119121, Russia.ORCID https://orcid.org/0000-0003-1757-8004
Dmitry A FilimonovDepartment of Bioinformatics, Institute of Biomedical Chemistry, 10 Bldg. 8, Pogodinskaya Str., Moscow 119121, Russia.ORCID https://orcid.org/0000-0002-0339-8478
Vladimir V PoroikovDepartment of Bioinformatics, Institute of Biomedical Chemistry, 10 Bldg. 8, Pogodinskaya Str., Moscow 119121, Russia.ORCID https://orcid.org/0000-0001-7937-2621
Bioinformatics Institute · RUPirogov Russian National Research Medical University · RU

Funding

No grant is acknowledged in the PubMed record.

6 · The paper itself

Abstract

After the biotransformation of xenobiotics in the human body, the biological activity of the metabolites may differ from the activity of parent compounds. Therefore, to assess the overall biological activity of a drug-like compound, it is important to take into account its metabolites and their biological activity. We developed MetaTox 2.0-an updated version of the MetaTox web application that was able to predict the metabolites of xenobiotics. Innovations include estimating the biological activity profile of a compound and taking into account its metabolites. The estimation is based on the PASS (prediction of activity spectra for substances) algorithm and on the latest version of the training set covering over 1900 biological activities predicted with an average accuracy exceeding 0.97. Also, MetaTox 2.0 allows the search for similar substances among more than 2000 drugs with known metabolic networks, which were extracted from the ChEMBL, MetXBIODB, and DrugBank databases. MetaTox 2.0 is freely available on the web at https://www.way2drug.com/metatox.

Identifiers

PMID38075828
PMCPMC10702315
OpenAlexW4388961610

What Socratic holds

Textmetadata
LicenceCC BY-NC-ND
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the Socratic graph.