Evidence map›Paper›PMID 38100545›Full record

ArticleScience immunology2023

Early human lung immune cell development and its role in epithelial cell fate.

Josephine L Barnes, Masahiro Yoshida, Peng He, Kaylee B Worlock, Rik G H Lindeboom, Chenqu Suo, J Patrick Pett, Anna Wilbrey-Clark, Emma Dann, Lira Mamanova and 23 more

Open access · greenAbstract read
In one paragraph

Article in Science immunology, 2023. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 37 papers.

0numbers the graph read from it
0cells of the map it votes in
37citing papers in PubMed
22.2field-weighted citation impact, top 1% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

37 citing papers in PubMed, 87 citations in OpenAlex.

  1. Article
  2. Macrophages in embryonic development.Nature reviews. Immunology · 2026
    Review
  3. Review
  4. Article
  5. Article
  6. Article
  7. Review
  8. Article
  9. Review
  10. Review
  11. Review
  12. Article
  13. Article
  14. Gene-ius at Work: Decoding Cell States through Expression.American journal of respiratory cell and molecular biology · 2025
    Article
  15. Article
  16. Article
  17. Review
  18. Review
  19. Article
  20. Cellular imbalance in proximal and distal lung of CFTRMolecular medicine (Cambridge, Mass.) · 2025
    Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

33 authors at 11 institutions in 5 countries.

Josephine L BarnesUCL Respiratory, Division of Medicine, University College London, London, UK.ORCID 0000-0001-9938-3176
Masahiro YoshidaUCL Respiratory, Division of Medicine, University College London, London, UK.ORCID 0000-0002-3521-5322
Peng HeWellcome Sanger Institute, Wellcome Genome Campus, Cambridge, UK.ORCID 0000-0002-2457-3554
Kaylee B WorlockUCL Respiratory, Division of Medicine, University College London, London, UK.
Rik G H LindeboomWellcome Sanger Institute, Wellcome Genome Campus, Cambridge, UK.ORCID 0000-0002-3660-504X
Chenqu SuoWellcome Sanger Institute, Wellcome Genome Campus, Cambridge, UK.ORCID 0000-0002-8813-0875
J Patrick PettWellcome Sanger Institute, Wellcome Genome Campus, Cambridge, UK.ORCID 0000-0002-5249-444X
Anna Wilbrey-ClarkWellcome Sanger Institute, Wellcome Genome Campus, Cambridge, UK.ORCID 0000-0002-5399-7997
Emma DannWellcome Sanger Institute, Wellcome Genome Campus, Cambridge, UK.ORCID 0000-0002-7400-7438
Lira MamanovaWellcome Sanger Institute, Wellcome Genome Campus, Cambridge, UK.ORCID 0000-0003-1463-8622
Laura RichardsonWellcome Sanger Institute, Wellcome Genome Campus, Cambridge, UK.ORCID 0000-0001-9064-1271
Krzysztof PolanskiWellcome Sanger Institute, Wellcome Genome Campus, Cambridge, UK.ORCID 0000-0002-2586-9576
Adam PennycuickUCL Respiratory, Division of Medicine, University College London, London, UK.ORCID 0000-0001-5836-0250
Jessica Allen-HyttinenUCL Respiratory, Division of Medicine, University College London, London, UK.ORCID 0000-0003-4644-0362
Iván T HerczegUCL Respiratory, Division of Medicine, University College London, London, UK.ORCID 0000-0003-1281-3634
Romina ArziliUCL Respiratory, Division of Medicine, University College London, London, UK.ORCID 0009-0008-1144-2097
Robert E HyndsEpithelial Cell Biology in ENT Research (EpiCENTR) Group, Developmental Biology and Cancer Department, Great Ormond Street UCL Institute of Child Health, University College London, London, UK.ORCID 0000-0002-2170-8791
Vitor H TeixeiraUCL Respiratory, Division of Medicine, University College London, London, UK.ORCID 0000-0003-0090-861X
Muzlifah HaniffaWellcome Sanger Institute, Wellcome Genome Campus, Cambridge, UK.ORCID 0000-0002-3927-2084
Kyungtae LimWellcome Trust/CRUK Gurdon Institute and Department of Physiology, Development and Neuroscience, University of Cambridge, Cambridge, UK.ORCID 0000-0001-6044-2191
Dawei SunWellcome Trust/CRUK Gurdon Institute and Department of Physiology, Development and Neuroscience, University of Cambridge, Cambridge, UK.ORCID 0000-0003-1551-4349
Emma L RawlinsWellcome Trust/CRUK Gurdon Institute and Department of Physiology, Development and Neuroscience, University of Cambridge, Cambridge, UK.ORCID 0000-0001-7426-3792
Amanda J OliverWellcome Sanger Institute, Wellcome Genome Campus, Cambridge, UK.ORCID 0000-0003-1690-9027
Paul A LyonsDepartment of Medicine, University of Cambridge, Cambridge Biomedical Campus, Cambridge, UK.ORCID 0000-0001-7035-8997
John C MarioniWellcome Sanger Institute, Wellcome Genome Campus, Cambridge, UK.ORCID 0000-0001-9092-0852
Christiana RuhrbergUCL Institute of Ophthalmology, University College London, London, UK.ORCID 0000-0002-3212-9381
Zewen Kelvin TuongWellcome Sanger Institute, Wellcome Genome Campus, Cambridge, UK.ORCID 0000-0002-6735-6808
Menna R ClatworthyWellcome Sanger Institute, Wellcome Genome Campus, Cambridge, UK.ORCID 0000-0002-3340-9828
James L ReadingCRUK Lung Cancer Centre Of Excellence, UCL Cancer Institute, University College London, London, UK.ORCID 0000-0001-5381-978X
Sam M JanesUCL Respiratory, Division of Medicine, University College London, London, UK.ORCID 0000-0002-6634-5939
Sarah A TeichmannWellcome Sanger Institute, Wellcome Genome Campus, Cambridge, UK.ORCID 0000-0002-6294-6366
Kerstin B MeyerWellcome Sanger Institute, Wellcome Genome Campus, Cambridge, UK.ORCID 0000-0001-5906-1498
Marko Z NikolićUCL Respiratory, Division of Medicine, University College London, London, UK.ORCID 0000-0001-6304-6848
Wellcome Sanger Institute · GBUniversity College London · GBUniversity of Cambridge · GBCRUK Lung Cancer Centre of Excellence · GBEuropean Bioinformatics Institute · GBThe Gurdon Institute · GBUniversity College London Hospitals NHS Foundation Trust · GBChildren's Medical Research Institute · AUDutch Cancer Society · NLJikei University School of Medicine · JPKorea University · KR

Funding

Cancer Research UK EDDPJT-NOV22/100042Department of Health RP-2017-08-ST2-002Medical Research Council MR/P009581/1Medical Research Council MR/R006237/1Medical Research Council MR/R015635/1Medical Research Council MR/S005579/1Medical Research Council MR/S035842/1Medical Research Council MR/S035907/1Medical Research Council MR/W00111X/1Medical Research Council MR/W025051/1National Centre for the Replacement, Refinement and Reduction of Animals in Research NC/X001644/1Wellcome Trust 206194Wellcome Trust 220268
6 · The paper itself

Abstract

Studies of human lung development have focused on epithelial and mesenchymal cell types and function, but much less is known about the developing lung immune cells, even though the airways are a major site of mucosal immunity after birth. An unanswered question is whether tissue-resident immune cells play a role in shaping the tissue as it develops in utero. Here, we profiled human embryonic and fetal lung immune cells using scRNA-seq, smFISH, and immunohistochemistry. At the embryonic stage, we observed an early wave of innate immune cells, including innate lymphoid cells, natural killer cells, myeloid cells, and lineage progenitors. By the canalicular stage, we detected naive T lymphocytes expressing high levels of cytotoxicity genes and the presence of mature B lymphocytes, including B-1 cells. Our analysis suggests that fetal lungs provide a niche for full B cell maturation. Given the presence and diversity of immune cells during development, we also investigated their possible effect on epithelial maturation. We found that IL-1β drives epithelial progenitor exit from self-renewal and differentiation to basal cells in vitro. In vivo, IL-1β-producing myeloid cells were found throughout the lung and adjacent to epithelial tips, suggesting that immune cells may direct human lung epithelial development.

Indexed as

Immunity, InnateLungCell DifferentiationEpithelial CellsHumansKiller Cells, Natural

Identifiers

PMID38100545
PMCPMC7615868
OpenAlexW4389777960

What Socratic holds

Textmetadata
LicenceCC BY
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the Socratic graph.