Evidence map›Paper›PMID 38102157›Full record

ArticleScientific reports2023

An immunoinformatics study reveals a new BoLA-DR-restricted CD4+ T cell epitopes on the Gag protein of bovine leukemia virus.

Aneta Pluta, Tasia Marie Taxis, Frank van der Meer, Sulav Shrestha, Dominic Qualley, Paul Coussens, Marzena Rola-Łuszczak, Anna Ryło, Ali Sakhawat, Saltanat Mamanova and 1 more

Open access · goldAbstract read
In one paragraph

Article in Scientific reports, 2023. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 2 papers.

0numbers the graph read from it
0cells of the map it votes in
2citing papers in PubMed
0.5field-weighted citation impact, top 32% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

2 citing papers in PubMed, 3 citations in OpenAlex.

  1. Article
  2. Review
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

11 authors at 5 institutions in 4 countries.

Aneta PlutaDepartment of Biochemistry, National Veterinary Research Institute, 24-100, Puławy, Poland. aneta.pluta@piwet.pulawy.pl.
Tasia Marie TaxisDepartment of Animal Science, College of Agriculture and Natural Resources, Michigan State University, East Lansing, MI, 48824, USA.
Frank van der MeerFaculty of Veterinary Medicine, University of Calgary, Calgary, AB, Canada.
Sulav ShresthaFaculty of Veterinary Medicine, University of Calgary, Calgary, AB, Canada.
Dominic QualleyDepartment of Chemistry and Biochemistry, and Center for One Health Studies, Berry College, Mt. Berry, GA, 30149, USA.
Paul CoussensDepartment of Animal Science, College of Agriculture and Natural Resources, Michigan State University, East Lansing, MI, 48824, USA.
Marzena Rola-ŁuszczakDepartment of Biochemistry, National Veterinary Research Institute, 24-100, Puławy, Poland.
Anna RyłoDepartment of Biochemistry, National Veterinary Research Institute, 24-100, Puławy, Poland.
Ali SakhawatAnimal Quarantine Department, Ministry of National Food Security and Research, Peshawar, 25000, Pakistan.
Saltanat MamanovaLaboratory of Virology, Kazakh Scientific Research Veterinary Institute, LLP, 223 Raiymbek Avenue, 050000, Almaty, Republic of Kazakhstan.
Jacek KuźmakDepartment of Biochemistry, National Veterinary Research Institute, 24-100, Puławy, Poland.
National Veterinary Research Institute · PLMichigan State University · USUniversity of Calgary · CABerry College · USKazakh Scientific Research Veterinary Institute · KZ

Funding

No grant is acknowledged in the PubMed record.

6 · The paper itself

Abstract

Bovine leukemia virus (BLV) is the causative agent of enzootic bovine leucosis (EBL), which has been reported worldwide. The expression of viral structural proteins: surface glycoprotein (gp51) and three core proteins - p15 (matrix), p24 (capsid), and p12 (nucleocapsid) induce a strong humoral and cellular immune response at first step of infection. CD4+ T-cell activation is generally induced by bovine leukocyte antigen (BoLA) region- positive antigen-presenting cells (APC) after processing of an exogenous viral antigen. Limited data are available on the BLV epitopes from the core proteins recognized by CD4+ T-cells. Thus, immunoinformatic analysis of Gag sequences obtained from 125 BLV isolates from Poland, Canada, Pakistan, Kazakhstan, Moldova and United States was performed to identify the presence of BoLA-DRB3 restricted CD4+ T-cell epitopes. The 379 15-mer overlapping peptides spanning the entire Gag sequence were run in BoLA-DRB3 allele-binding regions using a BoLA-DRB- peptide binding affinity prediction algorithm. The analysis identified 22 CD4+ T-cell peptide epitopes of variable length ranging from 17 to 22 amino acids. The predicted epitopes interacted with 73 different BoLA-DRB3 alleles found in BLV-infected cattle. Importantly, two epitopes were found to be linked with high proviral load in PBMC. A majority of dominant and subdominant epitopes showed high conservation across different viral strains, and therefore could be attractive targets for vaccine development.

Indexed as

CD4-Positive T-LymphocytesLeukemia Virus, BovineAnimalsCattleEpitopes, T-LymphocyteGene Products, gagHLA-DR AntigensLeukocytes, MononuclearPeptidesEpitopes, T-LymphocyteGene Products, gagHLA-DR AntigensPeptides

Identifiers

PMID38102157
PMCPMC10724172
OpenAlexW4389778058

What Socratic holds

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LicenceCC BY
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Registered trials

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Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the Socratic graph.