Evidence map›Paper›PMID 38107485›Full record

ArticleAnnual review of ecology, evolution, and systematics2022

Simulation Tests of Methods in Evolution, Ecology, and Systematics: Pitfalls, Progress, and Principles.

Katie E Lotterhos, Matthew C Fitzpatrick, Heath Blackmon

Abstract read
In one paragraph

Article in Annual review of ecology, evolution, and systematics, 2022. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 8 papers.

0numbers the graph read from it
0cells of the map it votes in
8citing papers in PubMed
–field-weighted citation impact
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

8 citing papers in PubMed.

  1. Article
  2. Article
  3. Article
  4. Article
  5. Article
  6. Article
  7. Review
  8. The paradox of adaptive trait clines with nonclinal patterns in the underlying genes.Proceedings of the National Academy of Sciences of the United States of America · 2023
    Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

3 authors.

Katie E LotterhosDepartment of Marine and Environmental Sciences, Northeastern University, Nahant, Massachusetts, USA.
Matthew C FitzpatrickAppalachian Lab, University of Maryland Center for Environmental Science, Frostburg, Maryland, USA.
Heath BlackmonDepartment of Biology, Texas A&M University, College Station, Texas, USA.

Funding

Integrating theory, genomics, and comparative approaches to break barriers to the understanding of genome structure and sex chromosome evolution.R35GM138098 · NIGMS · TEXAS A&M UNIVERSITY · PI BLACKMON, HEATH · 2020 to 2024
$1.8M
NIGMS NIH HHS R35 GM138098
6 · The paper itself

Abstract

Complex statistical methods are continuously developed across the fields of ecology, evolution, and systematics (EES). These fields, however, lack standardized principles for evaluating methods, which has led to high variability in the rigor with which methods are tested, a lack of clarity regarding their limitations, and the potential for misapplication. In this review, we illustrate the common pitfalls of method evaluations in EES, the advantages of testing methods with simulated data, and best practices for method evaluations. We highlight the difference between method evaluation and validation and review how simulations, when appropriately designed, can refine the domain in which a method can be reliably applied. We also discuss the strengths and limitations of different evaluation metrics. The potential for misapplication of methods would be greatly reduced if funding agencies, reviewers, and journals required principled method evaluation.

Indexed as

area under the curvebenchmark data setsdomain of applicabilityequifinalityevaluationvalidation

Identifiers

PMID38107485
PMCPMC10723108

What Socratic holds

Textmetadata
LicenceTDM
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the Socratic graph.