Evidence map›Paper›PMID 38155402›Full record

ArticleG3 (Bethesda, Md.)2024

Whole-genome sequence and annotation of Penstemon davidsonii.

Kate L Ostevik, Magdy Alabady, Mengrui Zhang, Mark D Rausher

Abstract read
In one paragraph

Article in G3 (Bethesda, Md.), 2024. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 4 papers.

0numbers the graph read from it
0cells of the map it votes in
4citing papers in PubMed
–field-weighted citation impact
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

4 citing papers in PubMed.

  1. Article
  2. Review
  3. Article
  4. Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

4 authors.

Kate L OstevikDepartment of Evolution, Ecology, and Organismal Biology, University of California Riverside, Riverside, CA 92521, USA.
Magdy AlabadyDepartment of Plant Biology, University of Georgia, Athens, GA 30602, USA.ORCID 0000-0002-1601-682X
Mengrui ZhangDepartment of Statistics, University of Georgia, Athens, GA 30602, USA.
Mark D RausherDepartment of Biology, Duke University, Durham, NC 27708, USA.

Funding

NSF DEB-1542387
6 · The paper itself

Abstract

Penstemon is the most speciose flowering plant genus endemic to North America. Penstemon species' diverse morphology and adaptation to various environments have made them a valuable model system for studying evolution. Here, we report the first full reference genome assembly and annotation for Penstemon davidsonii. Using PacBio long-read sequencing and Hi-C scaffolding technology, we constructed a de novo reference genome of 437,568,744 bases, with a contig N50 of 40 Mb and L50 of 5. The annotation includes 18,199 gene models, and both the genome and transcriptome assembly contain over 95% complete eudicot BUSCOs. This genome assembly will serve as a valuable reference for studying the evolutionary history and genetic diversity of the Penstemon genus.

Indexed as

PenstemonChromosomesGenomeHigh-Throughput Nucleotide SequencingMolecular Sequence AnnotationTranscriptomeDavidson's beardtonguegenome annotationgenome assemblyHi-CPacBio HifiPenstemon davidsonii

Identifiers

PMID38155402
PMCPMC10917496

What Socratic holds

Textmetadata
LicenceCC BY
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the Socratic graph.