Evidence map›Paper›PMID 38168930›Full record

ArticleNature genetics2024

MESuSiE enables scalable and powerful multi-ancestry fine-mapping of causal variants in genome-wide association studies.

Boran Gao, Xiang Zhou

Abstract read
In one paragraph

Article in Nature genetics, 2024. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 43 papers, 6 of them syntheses that pooled it.

0numbers the graph read from it
0cells of the map it votes in
43citing papers in PubMed, 6 pooled it
–field-weighted citation impact
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

43 citing papers in PubMed, 6 syntheses or guidelines pooled it.

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4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

2 authors.

Boran GaoDepartment of Biostatistics, University of Michigan, Ann Arbor, MI, USA.ORCID 0000-0002-8620-0534
Xiang ZhouDepartment of Biostatistics, University of Michigan, Ann Arbor, MI, USA. xzhousph@umich.edu.ORCID 0000-0002-4331-7599

Funding

Statistical Methods for Modeling Polygenic Architecture in Association and Re-sequencing StudiesR01HG009124 · NHGRI · YALE UNIVERSITY · PI Xiang Zhou · 2017 to 2026
$3.0M
DMS/NIGMS 2: Advanced Statistical Methods for Spatially Resolved Transcriptomics StudiesR01GM144960 · NIGMS · UNIVERSITY OF MICHIGAN AT ANN ARBOR · PI ZHOU, XIANG · 2021 to 2024
$1.3M
NHGRI NIH HHS R01 HG009124NIGMS NIH HHS R01 GM144960U.S. Department of Health & Human Services | National Institutes of Health (NIH) R01HG009124Wellcome Trust
6 · The paper itself

Abstract

Fine-mapping in genome-wide association studies attempts to identify causal SNPs from a set of candidate SNPs in a local genomic region of interest and is commonly performed in one genetic ancestry at a time. Here, we present multi-ancestry sum of the single effects model (MESuSiE), a probabilistic multi-ancestry fine-mapping method, to improve the accuracy and resolution of fine-mapping by leveraging association information across ancestries. MESuSiE uses summary statistics as input, accounts for the diverse linkage disequilibrium pattern observed in different ancestries, explicitly models both shared and ancestry-specific causal SNPs, and relies on a variational inference algorithm for scalable computation. We evaluated the performance of MESuSiE through comprehensive simulations and multi-ancestry fine-mapping of four lipid traits with both European and African samples. In the real data, MESuSiE improves fine-mapping resolution by 19.0% to 72.0% compared to existing approaches, is an order of magnitude faster, and captures and categorizes shared and ancestry-specific causal signals with enhanced functional enrichment.

Indexed as

AlgorithmsGenome-Wide Association StudyBlack PeopleEuropean PeopleGenomicsHumansLinkage DisequilibriumPolymorphism, Single Nucleotide

Identifiers

PMID38168930
PMCPMC11849347

What Socratic holds

Textmetadata
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Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the Socratic graph.