Evidence map›Paper›PMID 38178783›Full record

ArticleCancer science2024

Molecular and clinicopathological features of KIT/PDGFRA wild-type gastrointestinal stromal tumors.

Toshirou Nishida, Yoichi Naito, Tsuyoshi Takahashi, Takuro Saito, Shigeo Hisamori, Dai Manaka, Katsuhiro Ogawa, Seiichi Hirota, Hitoshi Ichikawa

Open access · goldAbstract read
In one paragraph

Article in Cancer science, 2024. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 16 papers.

0numbers the graph read from it
0cells of the map it votes in
16citing papers in PubMed
7.4field-weighted citation impact, top 2% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

16 citing papers in PubMed, 16 citations in OpenAlex.

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  16. Small bowel GISTs: clinicopathological patterns and the role of inflammatory markers.Romanian journal of morphology and embryology = Revue roumaine de morphologie et embryologie
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4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

9 authors at 8 institutions in 2 countries.

Toshirou NishidaDepartment of Surgery, Japan Community Health-care Organization Osaka Hospital, Osaka, Japan.ORCID https://orcid.org/0000-0002-1542-6317
Yoichi NaitoDepartment of General Internal Medicine, National Cancer Center Hospital East, Kashiwa, Japan.ORCID https://orcid.org/0000-0002-8490-9064
Tsuyoshi TakahashiDepartment of Gastroenterological Surgery, Osaka University Graduate School of Medicine, Suita, Japan.ORCID https://orcid.org/0000-0003-2397-1478
Takuro SaitoDepartment of Gastroenterological Surgery, Osaka University Graduate School of Medicine, Suita, Japan.ORCID https://orcid.org/0000-0002-1733-5064
Shigeo HisamoriDepartment of Surgery, Graduate School of Medicine, Kyoto University, Kyoto, Japan.
Dai ManakaDepartment of Surgery, Kyoto Katsura Hospital, Kyoto, Japan.
Katsuhiro OgawaDepartment of Surgery, Saiseikai Kumamoto Hospital, Kumamoto, Japan.
Seiichi HirotaDepartment of Surgical Pathology, Hyogo Medical University School of Medicine, Nishinomiya, Japan.
Hitoshi IchikawaDepartment of Clinical Genomics, National Cancer Center Research Institute, Tokyo, Japan.
Hyogo Medical University · JPKyoto Katsura Hospital · JPKyoto University · JPNational Cancer Center Hospital East · JPNational Institute of Biomedical Innovation, Health and Nutrition · JPOsaka Police Hospital · JPSaiseikai Kumamoto Hospital · JPThe University of Osaka · JP

Funding

Scientific research from the Japanese Ministry of Education, Culture, Sports, Science and Technology 19H03722
6 · The paper itself

Abstract

Approximately 10% of gastrointestinal stromal tumors (GISTs) harbor reportedly no KIT and PDGFRA mutations (wild-type GISTs). The clinicopathological features and oncologic outcomes of wild-type GISTs based on molecular profiles are unknown. We recruited 35 wild-type GIST patients from the two registry studies of high-risk GISTs between 2012 and 2015 and primary GISTs between 2003 and 2014. Molecular profiling of wild-type GISTs was performed by targeted next-generation sequencing (NGS) using formalin-fixed paraffin-embedded tumor samples. Among 35 wild-type GISTs, targeted NGS analysis detected NF1, SDH, or BRAF mutation: 16 NF1-GISTs with various NF1 mutations, 12 SDH-GISTs (4 with SDHA mutations, 4 with SDHB mutations, and 4 with SDHB-negative staining), and 5 BRAF-GISTs with the V600E mutation. Two GISTs showed no mutations based on our targeted NGS analysis. Additional gene mutations were infrequent in primary wild-type GISTs and found in TP53, CREBBP, CDKN2A, and CHEK2. Most NF1-GISTs were located in the small intestine (N = 12; 75%) and showed spindle cell features (N = 15; 94%) and multiple tumors (N = 6, 38%) with modest proliferation activities. In contrast, SDH-GISTs were predominantly found in the stomach (N = 11; 92%), exhibiting epithelioid cell (N = 6; 50%) and multiple (N = 6, 50%) features. The overall survival of patients with SDH-GISTs appeared to be better than that of BRAF-GISTs (p = 0.0107) or NF1-GISTs (p = 0.0754), respectively. In conclusion, major molecular changes in wild-type GISTs include NF1, SDH, and BRAF. NF1-GISTs involved multifocal spindle cell tumors in the small intestine. SDH-GISTs occurred in young patients and were multifocal in the stomach and clinically indolent.

Indexed as

Gastrointestinal Stromal TumorsHumansMutationProto-Oncogene Proteins B-rafProto-Oncogene Proteins c-kitReceptor, Platelet-Derived Growth Factor alphaReceptor Protein-Tyrosine KinasesSuccinate DehydrogenaseKIT protein, humanProto-Oncogene Proteins B-rafProto-Oncogene Proteins c-kitReceptor, Platelet-Derived Growth Factor alphaReceptor Protein-Tyrosine KinasesSuccinate Dehydrogenaseclinicopathological featuresgastrointestinal stromal tumorNF1prognostic outcomesSDH

Identifiers

PMID38178783
PMCPMC10920999
OpenAlexW4390609198

What Socratic holds

Textmetadata
LicenceCC BY-NC
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the Socratic graph.