Evidence map›Paper›PMID 38196603›Full record

ArticlemedRxiv : the preprint server for health sciences2023

Unveiling the autoreactome: Proteome-wide immunological fingerprints reveal the promise of plasma cell depleting therapy.

Aaron Bodansky, David Jl Yu, Alysa Rallistan, Muge Kalaycioglu, Jim Boonyaratanakornkit, Damian J Green, Jordan Gauthier, Cameron J Turtle, Kelsey Zorn, Brian O'Donovan and 23 more

Open access · greenAbstract readPreprint
In one paragraph

Article in medRxiv : the preprint server for health sciences, 2023. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Not yet cited in PubMed.

0numbers the graph read from it
0cells of the map it votes in
0citing papers in PubMed
–field-weighted citation impact
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

0 citing papers in PubMed, 7 citations in OpenAlex.

No citing paper in PubMed yet.

4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

33 authors at 6 institutions in 2 countries.

Aaron BodanskyDepartment of Pediatrics, Division of Critical Care, University of California San Francisco, San Francisco, CA.ORCID 0000-0001-8943-8233
David Jl YuDiabetes Center, School of Medicine, University of California San Francisco, San Francisco, CA.
Alysa RallistanDepartment of Medicine, Division of Immunology and Rheumatology, Stanford University, Stanford, CA 94305.
Muge KalayciogluInstitute of Immunity, Transplantation, and Infection (ITI), Stanford University, Stanford, CA 94305.ORCID 0009-0006-5224-9926
Jim BoonyaratanakornkitFred Hutchinson Cancer Center, Seattle, WA, USA.ORCID 0000-0001-5858-2662
Damian J GreenFred Hutchinson Cancer Center, Seattle, WA, USA.ORCID 0000-0003-0477-1446
Jordan GauthierFred Hutchinson Cancer Center, Seattle, WA, USA.ORCID 0000-0002-5769-8409
Cameron J TurtleFred Hutchinson Cancer Center, Seattle, WA, USA.ORCID 0000-0002-4722-4461
Kelsey ZornDepartment of Biochemistry and Biophysics, University of California San Francisco, San Francisco, CA.ORCID 0000-0003-1227-2137
Brian O'DonovanDepartment of Biochemistry and Biophysics, University of California San Francisco, San Francisco, CA.
Caleigh Mandel-BrehmDepartment of Biochemistry and Biophysics, University of California San Francisco, San Francisco, CA.
James AsakiBiomedical Sciences Program, University of California San Francisco, San Francisco, CA.ORCID 0000-0002-8201-6588
Hannah KortbawiDepartment of Biochemistry and Biophysics, University of California San Francisco, San Francisco, CA.
Andrew F KungDepartment of Biochemistry and Biophysics, University of California San Francisco, San Francisco, CA.
Elze RackaityteDepartment of Biochemistry and Biophysics, University of California San Francisco, San Francisco, CA.
Chung-Yu WangChan Zuckerberg Biohub SF, San Francisco, CA.ORCID 0000-0002-2236-0264
Aditi SaxenaChan Zuckerberg Biohub SF, San Francisco, CA.ORCID 0000-0001-5736-5180
Kimberly de DiosDiabetes Center, School of Medicine, University of California San Francisco, San Francisco, CA.
Gianvito MasiDepartment of Neurology, Yale School of Medicine, New Haven, CT.
Richard J NowakDepartment of Neurology, Yale School of Medicine, New Haven, CT.
Kevin C O'ConnorDepartment of Neurology, Yale School of Medicine, New Haven, CT.
Hao LiDepartment of Biochemistry and Biophysics, University of California San Francisco, San Francisco, CA.
Valentina E DiazMemory and Aging Center, Department of Neurology, Weill Institute for Neurosciences, University of California, San Francisco, CA, USA.
Kaitlin B CasalettoMemory and Aging Center, Department of Neurology, Weill Institute for Neurosciences, University of California, San Francisco, CA, USA.
Eva Q GontrumMemory and Aging Center, Department of Neurology, Weill Institute for Neurosciences, University of California, San Francisco, CA, USA.
Brandon ChanMemory and Aging Center, Department of Neurology, Weill Institute for Neurosciences, University of California, San Francisco, CA, USA.
Joel H KramerMemory and Aging Center, Department of Neurology, Weill Institute for Neurosciences, University of California, San Francisco, CA, USA.
Michael R WilsonWeill Institute for Neurosciences, University of California San Francisco; San Francisco, CA.
Paul J UtzDepartment of Medicine, Division of Immunology and Rheumatology, Stanford University, Stanford, CA 94305.
Joshua A HillFred Hutchinson Cancer Center, Seattle, WA, USA.ORCID 0000-0002-3617-6142
Shaun W JacksonLaboratory Medicine and Pathology, University of Washington School of Medicine, Seattle, WA.ORCID 0000-0002-7024-5252
Mark S AndersonDiabetes Center, School of Medicine, University of California San Francisco, San Francisco, CA.
Joseph L DeRisiDepartment of Biochemistry and Biophysics, University of California San Francisco, San Francisco, CA.
University of California, San Francisco · USUniversity of Washington · USYale University · USChan Zuckerberg Initiative (United States) · USStanford University · USInstitute of Infection and Immunity · CA

Funding

The Impact of COVID-19 on People Living with Rare Diseases and Their FamiliesU2CTR002818 · NCATS · CINCINNATI CHILDRENS HOSP MED CTR · PI Maurizio Macaluso, Michael Wagner · 2019 to 2026
$51.2M
Pediatric Scientist Development Program (PSDP) [K12]K12HD000850 · NICHD · YALE UNIVERSITY · PI Sallie R. Permar · 1987 to 2026
$44.1M
Research Education ComponentP30AG062422 · NIA · UNIVERSITY OF CALIFORNIA, SAN FRANCISCO · PI Katherine P Rankin · 2019 to 2026
$36.9M
Rare Disease Network for Myasthenia GravisU54NS115054 · NINDS · GEORGE WASHINGTON UNIVERSITY · PI HENRY J KAMINSKI · 2019 to 2026
$11.9M
Mechanisms of Executive Decline in Normal AgingR01AG032289 · NIA · UNIVERSITY OF CALIFORNIA, SAN FRANCISCO · PI Kaitlin B Casaletto, JOEL H KRAMER · 2009 to 2026
$8.3M
Mechanisms of autoimmunity in myasthenia gravisR01AI114780 · NIAID · YALE UNIVERSITY · PI Kevin C O'Connor · 2016 to 2026
$4.7M
Restorative practice in repairing harm and promoting safe and inclusive practices in the laboratory.T32GM136547 · NIGMS · UNIVERSITY OF CALIFORNIA, SAN FRANCISCO · PI Adrian Erlebacher, Anita Sil · 2020 to 2026
$4.5M
Unraveling the intersection of synaptic biology, lifestyle, and cognitive resilienceR01AG072475 · NIA · UNIVERSITY OF CALIFORNIA, SAN FRANCISCO · PI CASALETTO, KAITLIN B · 2021 to 2025
$4.3M
Mechanistic insights into systemic lupus erythematosus (SLE) pathogenesis from inborn errors of immunityR01AR073938 · NIAMS · SEATTLE CHILDREN'S HOSPITAL · PI Shaun William Jackson · 2019 to 2026
$4.0M
Humoral immunity after CAR-T cell therapy for B cell malignancies: The HICAR StudyU01CA247548 · NCI · FRED HUTCHINSON CANCER RESEARCH CENTER · PI HILL, JOSHUA AIDEN · 2020 to 2024
$3.7M
Impact of Loss-of-function NADPH Oxidase Variants on B-Cell Activation in SLER01AR075813 · NIAMS · SEATTLE CHILDREN'S HOSPITAL · PI JACKSON, SHAUN WILLIAM · 2021 to 2025
$2.8M
Molecular determinants driving diverse mechanisms of antibody-mediated pathologyR21AI164590 · NIAID · YALE UNIVERSITY · PI O'CONNOR, KEVIN C · 2021 to 2022
$461k
NCATS NIH HHS U2C TR002818NCI NIH HHS U01 CA247548NIAID NIH HHS R01 AI114780NIAID NIH HHS R21 AI142198NIAID NIH HHS R21 AI164590NIAMS NIH HHS R01 AR073938NIAMS NIH HHS R01 AR075813NIA NIH HHS P30 AG062422NIA NIH HHS R01 AG032289NIA NIH HHS R01 AG072475NICHD NIH HHS K12 HD000850NIGMS NIH HHS T32 GM136547NINDS NIH HHS U54 NS115054
6 · The paper itself

Abstract

The prevalence and burden of autoimmune and autoantibody mediated disease is increasing worldwide, yet most disease etiologies remain unclear. Despite numerous new targeted immunomodulatory therapies, comprehensive approaches to apply and evaluate the effects of these treatments longitudinally are lacking. Here, we leverage advances in programmable-phage immunoprecipitation (PhIP-Seq) methodology to explore the modulation, or lack thereof, of proteome-wide autoantibody profiles in both health and disease. We demonstrate that each individual, regardless of disease state, possesses a distinct set of autoreactivities constituting a unique immunological fingerprint, or "autoreactome", that is remarkably stable over years. In addition to uncovering important new biology, the autoreactome can be used to better evaluate the relative effectiveness of various therapies in altering autoantibody repertoires. We find that therapies targeting B-Cell Maturation Antigen (BCMA) profoundly alter an individual's autoreactome, while anti-CD19 and CD-20 therapies have minimal effects, strongly suggesting a rationale for BCMA or other plasma cell targeted therapies in autoantibody mediated diseases.

Identifiers

PMID38196603
PMCPMC10775319
OpenAlexW4390038776

What Socratic holds

Textmetadata
LicenceCC BY-NC
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the Socratic graph.