Evidence map›Paper›PMID 38199845›Full record

ArticleLife science alliance2024

Chromatin targeting of the RNF12/RLIM E3 ubiquitin ligase controls transcriptional responses.

Carmen Espejo-Serrano, Catriona Aitken, Beatrice F Tan, Danielle G May, Rachel J Chrisopulos, Kyle J Roux, Jeroen Aa Demmers, Samuel G Mackintosh, Joost Gribnau, Francisco Bustos and 2 more

Open access · goldAbstract read
In one paragraph

Article in Life science alliance, 2024. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 2 papers.

0numbers the graph read from it
0cells of the map it votes in
2citing papers in PubMed
0.7field-weighted citation impact, top 33% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

2 citing papers in PubMed, 3 citations in OpenAlex.

  1. Article
  2. Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

12 authors at 5 institutions in 3 countries.

Carmen Espejo-SerranoMRC Protein Phosphorylation and Ubiquitylation Unit, School of Life Sciences, University of Dundee, Dundee, UK.ORCID https://orcid.org/0000-0003-4127-510X
Catriona AitkenMRC Protein Phosphorylation and Ubiquitylation Unit, School of Life Sciences, University of Dundee, Dundee, UK.
Beatrice F TanDepartment of Developmental Biology, Erasmus University Medical Center, Rotterdam, Netherlands.ORCID https://orcid.org/0000-0001-6362-7474
Danielle G MayEnabling Technologies Group, Sanford Research, Sioux Falls, SD, USA.ORCID https://orcid.org/0000-0002-2628-4414
Rachel J ChrisopulosEnabling Technologies Group, Sanford Research, Sioux Falls, SD, USA.
Kyle J RouxEnabling Technologies Group, Sanford Research, Sioux Falls, SD, USA.ORCID https://orcid.org/0000-0001-7530-5528
Jeroen Aa DemmersProteomics Center and Department of Biochemistry, Erasmus University Medical Center, Rotterdam, Netherlands.
Samuel G MackintoshDepartment of Biochemistry and Molecular Biology, University of Arkansas for Medical Sciences, Little Rock, AR, USA.
Joost GribnauDepartment of Developmental Biology, Erasmus University Medical Center, Rotterdam, Netherlands.
Francisco BustosDepartment of Pediatrics, Sanford School of Medicine, University of South Dakota, Sioux Falls, SD, USA.ORCID https://orcid.org/0000-0001-5457-4956
Cristina GontanDepartment of Developmental Biology, Erasmus University Medical Center, Rotterdam, Netherlands.ORCID https://orcid.org/0000-0002-3918-0024
Greg M FindlayMRC Protein Phosphorylation and Ubiquitylation Unit, School of Life Sciences, University of Dundee, Dundee, UK g.m.findlay@dundee.ac.uk.ORCID https://orcid.org/0000-0002-7222-4965
Erasmus MC · NLUniversity of Dundee · GBUniversity of Sioux Falls · USUniversity of South Dakota · USUniversity of Arkansas for Medical Sciences · US

Funding

Yeast 2 HybridP20GM103620 · NIGMS · SANFORD RESEARCH/USD · PI ROUX, KYLE J · 2013 to 2023
$24.2M
Supplement for Google cloud build-outR24GM137786 · NIGMS · UNIV OF ARKANSAS FOR MED SCIS · PI Alan Tackett · 2020 to 2026
$15.4M
Pilot Project ProgramP30GM145398 · NIGMS · SANFORD RESEARCH/USD · PI W KEITH MISKIMINS · 2023 to 2026
$6.2M
NIGMS NIH HHS P20 GM103620NIGMS NIH HHS P30 GM145398NIGMS NIH HHS R24 GM137786Wellcome Trust
6 · The paper itself

Abstract

Protein ubiquitylation regulates key biological processes including transcription. This is exemplified by the E3 ubiquitin ligase RNF12/RLIM, which controls developmental gene expression by ubiquitylating the REX1 transcription factor and is mutated in an X-linked intellectual disability disorder. However, the precise mechanisms by which ubiquitylation drives specific transcriptional responses are not known. Here, we show that RNF12 is recruited to specific genomic locations via a consensus sequence motif, which enables co-localisation with REX1 substrate at gene promoters. Surprisingly, RNF12 chromatin recruitment is achieved via a non-catalytic basic region and comprises a previously unappreciated N-terminal autoinhibitory mechanism. Furthermore, RNF12 chromatin targeting is critical for REX1 ubiquitylation and downstream RNF12-dependent gene regulation. Our results demonstrate a key role for chromatin in regulation of the RNF12-REX1 axis and provide insight into mechanisms by which protein ubiquitylation enables programming of gene expression.

Indexed as

ChromatinIntellectual DisabilityGenomicsHumansUbiquitinationUbiquitin-Protein LigasesChromatinRLIM protein, humanUbiquitin-Protein Ligases

Identifiers

PMID38199845
PMCPMC10781586
OpenAlexW4390691771

What Socratic holds

Textmetadata
LicenceCC BY
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the Socratic graph.