Evidence map›Paper›PMID 38203780›Full record

ArticleInternational journal of molecular sciences2024

AtSNP_TATAdb: Candidate Molecular Markers of Plant Advantages Related to Single Nucleotide Polymorphisms within Proximal Promoters of

Anton Bogomolov, Karina Zolotareva, Sergey Filonov, Irina Chadaeva, Dmitry Rasskazov, Ekaterina Sharypova, Nikolay Podkolodnyy, Petr Ponomarenko, Ludmila Savinkova, Natalya Tverdokhleb and 6 more

Open access · goldAbstract read
PubMed Full text at PMC Publisher
In one paragraph

Article in International journal of molecular sciences, 2024. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Not yet cited in PubMed.

0numbers the graph read from it
0cells of the map it votes in
0citing papers in PubMed
–field-weighted citation impact, top 100% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

0 citing papers in PubMed, 0 citations in OpenAlex.

No citing paper in PubMed yet.

4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

16 authors at 4 institutions in 1 country.

Anton BogomolovInstitute of Cytology and Genetics, Novosibirsk 630090, Russia.ORCID 0000-0003-4359-6089
Karina ZolotarevaInstitute of Cytology and Genetics, Novosibirsk 630090, Russia.
Sergey FilonovInstitute of Cytology and Genetics, Novosibirsk 630090, Russia.
Irina ChadaevaInstitute of Cytology and Genetics, Novosibirsk 630090, Russia.ORCID 0000-0002-2724-5441
Dmitry RasskazovInstitute of Cytology and Genetics, Novosibirsk 630090, Russia.
Ekaterina SharypovaInstitute of Cytology and Genetics, Novosibirsk 630090, Russia.ORCID 0000-0002-5517-920X
Nikolay PodkolodnyyInstitute of Cytology and Genetics, Novosibirsk 630090, Russia.
Petr PonomarenkoInstitute of Cytology and Genetics, Novosibirsk 630090, Russia.
Ludmila SavinkovaInstitute of Cytology and Genetics, Novosibirsk 630090, Russia.
Natalya TverdokhlebInstitute of Cytology and Genetics, Novosibirsk 630090, Russia.
Bato KhandaevInstitute of Cytology and Genetics, Novosibirsk 630090, Russia.
Ekaterina KondratyukInstitute of Cytology and Genetics, Novosibirsk 630090, Russia.
Olga PodkolodnayaInstitute of Cytology and Genetics, Novosibirsk 630090, Russia.
Elena ZemlyanskayaInstitute of Cytology and Genetics, Novosibirsk 630090, Russia.
Nikolay A KolchanovInstitute of Cytology and Genetics, Novosibirsk 630090, Russia.
Mikhail PonomarenkoInstitute of Cytology and Genetics, Novosibirsk 630090, Russia.ORCID 0000-0003-1663-318X
Institute of Cytology and Genetics · RUNovosibirsk State University · RUInstitute of Computational Mathematics and Mathematical Geophysics · RUSiberian Research Institute of Agriculture and Peat · RU

Funding

Russian government FWNR-2022-0020Russian government Russian Federal Science and Technology Program for the Development of Genetic TechnologiesRussian Science Foundation 20-14-00140
6 · The paper itself

Abstract

The mainstream of the post-genome target-assisted breeding in crop plant species includes biofortification such as high-throughput phenotyping along with genome-based selection. Therefore, in this work, we used the Web-service Plant_SNP_TATA_Z-tester, which we have previously developed, to run a uniform in silico analysis of the transcriptional alterations of 54,013 protein-coding transcripts from 32,833

Indexed as

ArabidopsisBiomarkersPlant BreedingPolymorphism, Single NucleotidePromoter Regions, GeneticBiomarkersestimates in silicogene expressiongenome-wide analysisnoncoding polymorphismtarget-assisted breedingTATA-binding proteinTATA boxverification in vivo

Identifiers

PMID38203780
PMCPMC10779315
OpenAlexW4390544156

What Socratic holds

Textmetadata
LicenceCC BY
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the Socratic graph.