Evidence map›Paper›PMID 38215203›Full record

ArticleScience advances2024

Cassette recombination dynamics within chromosomal integrons are regulated by toxin-antitoxin systems.

Egill Richard, Baptiste Darracq, Eloi Littner, Claire Vit, Clémence Whiteway, Julia Bos, Florian Fournes, Geneviève Garriss, Valentin Conte, Delphine Lapaillerie and 7 more

Abstract read
In one paragraph

Article in Science advances, 2024. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 13 papers.

0numbers the graph read from it
0cells of the map it votes in
13citing papers in PubMed
–field-weighted citation impact
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

13 citing papers in PubMed.

  1. Article
  2. A One Health Perspective onMicroorganisms · 2026
    Review
  3. Article
  4. Article
  5. Review
  6. Article
  7. Article
  8. Prokaryotic homeostasis - a solution to thrive and survive.Frontiers in molecular biosciences · 2025
    Review
  9. Article
  10. Article
  11. Article
  12. Article
  13. Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

17 authors.

Egill RichardInstitut Pasteur, Université Paris Cité, CNRS UMR3525, Unité Plasticité du Génome Bactérien, 75015 Paris, France.ORCID 0000-0002-9776-6197
Baptiste DarracqInstitut Pasteur, Université Paris Cité, CNRS UMR3525, Unité Plasticité du Génome Bactérien, 75015 Paris, France.ORCID 0000-0002-6257-4048
Eloi LittnerSorbonne Université, ED515, F-75005 Paris, France.ORCID 0000-0002-8793-9584
Claire VitInstitut Pasteur, Université Paris Cité, CNRS UMR3525, Unité Plasticité du Génome Bactérien, 75015 Paris, France.
Clémence WhitewayInstitut Pasteur, Université Paris Cité, CNRS UMR3525, Unité Plasticité du Génome Bactérien, 75015 Paris, France.ORCID 0000-0003-0393-5189
Julia BosInstitut Pasteur, Université Paris Cité, CNRS UMR3525, Unité Plasticité du Génome Bactérien, 75015 Paris, France.ORCID 0000-0002-4947-4675
Florian FournesInstitut Pasteur, Université Paris Cité, CNRS UMR3525, Unité Plasticité du Génome Bactérien, 75015 Paris, France.ORCID 0000-0002-7763-7478
Geneviève GarrissInstitut Pasteur, Université Paris Cité, CNRS UMR3525, Unité Plasticité du Génome Bactérien, 75015 Paris, France.ORCID 0000-0002-5361-0975
Valentin ConteInstitut Pasteur, Université Paris Cité, CNRS UMR3525, Unité Plasticité du Génome Bactérien, 75015 Paris, France.ORCID 0000-0002-1515-1229
Delphine LapaillerieUniversity of Bordeaux, Fundamental Microbiology and Pathogenicity Laboratory, CNRS, UMR 5234, SFR TransBioMed, Bordeaux, France.ORCID 0000-0001-9117-0547
Vincent ParissiUniversity of Bordeaux, Fundamental Microbiology and Pathogenicity Laboratory, CNRS, UMR 5234, SFR TransBioMed, Bordeaux, France.ORCID 0000-0003-1661-7841
François RoussetInstitut Pasteur, Université Paris Cité, CNRS UMR6047, Synthetic Biology, 75015 Paris, France.
Ole SkovgaardDepartment of Science, Systems and Models, Roskilde University, Roskilde DK-4000, Denmark.ORCID 0000-0002-4860-1847
David BikardInstitut Pasteur, Université Paris Cité, CNRS UMR6047, Synthetic Biology, 75015 Paris, France.ORCID 0000-0002-5729-1211
Eduardo P C RochaInstitut Pasteur, Université Paris Cité, CNRS UMR3525, Microbial Evolutionary Genomics, 75015 Paris, France.ORCID 0000-0001-7704-822X
Didier MazelInstitut Pasteur, Université Paris Cité, CNRS UMR3525, Unité Plasticité du Génome Bactérien, 75015 Paris, France.ORCID 0000-0001-6482-6002
Céline LootInstitut Pasteur, Université Paris Cité, CNRS UMR3525, Unité Plasticité du Génome Bactérien, 75015 Paris, France.ORCID 0000-0003-3774-249X

Funding

No grant is acknowledged in the PubMed record.

6 · The paper itself

Abstract

Integrons are adaptive bacterial devices that rearrange promoter-less gene cassettes into variable ordered arrays under stress conditions, thereby sampling combinatorial phenotypic diversity. Chromosomal integrons often carry hundreds of silent gene cassettes, with integrase-mediated recombination leading to rampant DNA excision and integration, posing a potential threat to genome integrity. How this activity is regulated and controlled, particularly through selective pressures, to maintain such large cassette arrays is unknown. Here, we show a key role of promoter-containing toxin-antitoxin (TA) cassettes as systems that kill the cell when the overall cassette excision rate is too high. These results highlight the importance of TA cassettes regulating the cassette recombination dynamics and provide insight into the evolution and success of integrons in bacterial genomes.

Indexed as

IntegronsToxin-Antitoxin SystemsBacteriaGenome, BacterialRecombination, Genetic

Identifiers

PMID38215203
PMCPMC13108822

What Socratic holds

Textmetadata
LicenceCC BY-NC
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the Socratic graph.