Evidence map›Paper›PMID 38225262›Full record

ArticleNature communications2024

Structural differences between the closely related RNA helicases, UAP56 and URH49, fashion distinct functional apo-complexes.

Ken-Ichi Fujita, Misa Ito, Midori Irie, Kotaro Harada, Naoko Fujiwara, Yuya Ikeda, Hanae Yoshioka, Tomohiro Yamazaki, Masaki Kojima, Bunzo Mikami and 2 more

Open access · goldAbstract read
In one paragraph

Article in Nature communications, 2024. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 11 papers.

0numbers the graph read from it
0cells of the map it votes in
11citing papers in PubMed
3.0field-weighted citation impact, top 9% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

11 citing papers in PubMed, 13 citations in OpenAlex.

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4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

12 authors at 3 institutions in 2 countries.

Ken-Ichi FujitaDivision of Integrated Life Sciences, Graduate School of Biostudies, Kyoto University, Kyoto, Kyoto, 606-8502, Japan. kefujit@ncc.go.jp.
Misa ItoDivision of Integrated Life Sciences, Graduate School of Biostudies, Kyoto University, Kyoto, Kyoto, 606-8502, Japan.
Midori IrieDivision of Integrated Life Sciences, Graduate School of Biostudies, Kyoto University, Kyoto, Kyoto, 606-8502, Japan.
Kotaro HaradaDivision of Integrated Life Sciences, Graduate School of Biostudies, Kyoto University, Kyoto, Kyoto, 606-8502, Japan.
Naoko FujiwaraDivision of Integrated Life Sciences, Graduate School of Biostudies, Kyoto University, Kyoto, Kyoto, 606-8502, Japan.
Yuya IkedaDivision of Integrated Life Sciences, Graduate School of Biostudies, Kyoto University, Kyoto, Kyoto, 606-8502, Japan.
Hanae YoshiokaDivision of Integrated Life Sciences, Graduate School of Biostudies, Kyoto University, Kyoto, Kyoto, 606-8502, Japan.
Tomohiro YamazakiDivision of Integrated Life Sciences, Graduate School of Biostudies, Kyoto University, Kyoto, Kyoto, 606-8502, Japan.ORCID 0000-0003-0866-5173
Masaki KojimaSchool of Life Sciences, Tokyo University of Pharmacy and Life Sciences, Hachioji, Tokyo, 192-0392, Japan.ORCID 0009-0001-9190-4923
Bunzo MikamiResearch Institute for Sustainable Humanosphere, Kyoto University, Kyoto, 611-0011, Japan.
Akila MayedaDivision of Gene Expression Mechanism, Center for Medical Science, Fujita Health University, Toyoake, Aichi, 470-1192, Japan.ORCID 0000-0002-9562-550X
Seiji MasudaDivision of Integrated Life Sciences, Graduate School of Biostudies, Kyoto University, Kyoto, Kyoto, 606-8502, Japan. smasuda@nara.kindai.ac.jp.ORCID 0000-0003-0295-6789
Kyoto University · JPFujita Health University · JPTokyo University of Pharmacy and Life Sciences · JP

Funding

MEXT | Japan Society for the Promotion of Science (JSPS) 17K19232MEXT | Japan Society for the Promotion of Science (JSPS) 19H02884MEXT | Japan Society for the Promotion of Science (JSPS) 19K15807MEXT | Japan Society for the Promotion of Science (JSPS) 19K22280MEXT | Japan Society for the Promotion of Science (JSPS) 21K19078MEXT | Japan Society for the Promotion of Science (JSPS) 26292053
6 · The paper itself

Abstract

mRNA export is an essential pathway for the regulation of gene expression. In humans, closely related RNA helicases, UAP56 and URH49, shape selective mRNA export pathways through the formation of distinct complexes, known as apo-TREX and apo-AREX complexes, and their subsequent remodeling into similar ATP-bound complexes. Therefore, defining the unidentified components of the apo-AREX complex and elucidating the molecular mechanisms underlying the formation of distinct apo-complexes is key to understanding their functional divergence. In this study, we identify additional apo-AREX components physically and functionally associated with URH49. Furthermore, by comparing the structures of UAP56 and URH49 and performing an integrated analysis of their chimeric mutants, we exhibit unique structural features that would contribute to the formation of their respective complexes. This study provides insights into the specific structural and functional diversification of these two helicases that diverged from the common ancestral gene Sub2.

Indexed as

DEAD-box RNA HelicasesRNA HelicasesActive Transport, Cell NucleusHumansRNA, MessengerRNA TransportDDX39A protein, humanDDX39B protein, humanDEAD-box RNA HelicasesRNA HelicasesRNA, Messenger

Identifiers

PMID38225262
PMCPMC10789772
OpenAlexW4390880639

What Socratic holds

Textmetadata
LicenceCC BY
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the Socratic graph.