Evidence map›Paper›PMID 38228921›Full record

ArticleRice (New York, N.Y.)2024

YGL3 Encoding an IPP and DMAPP Synthase Interacts with OsPIL11 to Regulate Chloroplast Development in Rice.

Wei Chen, Liqun Tang, Qianlong Li, Yicong Cai, Shakeel Ahmad, Yakun Wang, Shengjia Tang, Naihui Guo, Xiangjin Wei, Shaoqing Tang and 6 more

Open access · goldAbstract read
In one paragraph

Article in Rice (New York, N.Y.), 2024. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 5 papers.

0numbers the graph read from it
0cells of the map it votes in
5citing papers in PubMed
2.1field-weighted citation impact, top 14% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

5 citing papers in PubMed, 9 citations in OpenAlex.

  1. Article
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  3. Plants (Basel, Switzerland) · 2026
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4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

16 authors at 3 institutions in 1 country.

Wei Chen *State Key Laboratory of Rice Biology/Key Laboratory of Rice Biology and Breeding, Ministry of Agriculture/China National Rice improvement Centre, National Rice Research Institute, Hangzhou, 310006, P. R. China.
Liqun Tang *State Key Laboratory of Rice Biology/Key Laboratory of Rice Biology and Breeding, Ministry of Agriculture/China National Rice improvement Centre, National Rice Research Institute, Hangzhou, 310006, P. R. China.
Qianlong LiState Key Laboratory of Rice Biology/Key Laboratory of Rice Biology and Breeding, Ministry of Agriculture/China National Rice improvement Centre, National Rice Research Institute, Hangzhou, 310006, P. R. China.
Yicong CaiKey Labora tory of Crop Physiology, Ecology and Genetic Breeding, Research Center of Super Rice Engineering and Technology, Ministry of Education/Collaboration Center for Double-season Rice Modernization Production, Jiangxi Agricultural University, Nanchang, Jiangxi Province, 330045, P. R. China.
Shakeel AhmadState Key Laboratory of Rice Biology/Key Laboratory of Rice Biology and Breeding, Ministry of Agriculture/China National Rice improvement Centre, National Rice Research Institute, Hangzhou, 310006, P. R. China.
Yakun WangState Key Laboratory of Rice Biology/Key Laboratory of Rice Biology and Breeding, Ministry of Agriculture/China National Rice improvement Centre, National Rice Research Institute, Hangzhou, 310006, P. R. China.
Shengjia TangState Key Laboratory of Rice Biology/Key Laboratory of Rice Biology and Breeding, Ministry of Agriculture/China National Rice improvement Centre, National Rice Research Institute, Hangzhou, 310006, P. R. China.
Naihui GuoState Key Laboratory of Rice Biology/Key Laboratory of Rice Biology and Breeding, Ministry of Agriculture/China National Rice improvement Centre, National Rice Research Institute, Hangzhou, 310006, P. R. China.
Xiangjin WeiState Key Laboratory of Rice Biology/Key Laboratory of Rice Biology and Breeding, Ministry of Agriculture/China National Rice improvement Centre, National Rice Research Institute, Hangzhou, 310006, P. R. China.
Shaoqing TangState Key Laboratory of Rice Biology/Key Laboratory of Rice Biology and Breeding, Ministry of Agriculture/China National Rice improvement Centre, National Rice Research Institute, Hangzhou, 310006, P. R. China.
Gaoneng ShaoState Key Laboratory of Rice Biology/Key Laboratory of Rice Biology and Breeding, Ministry of Agriculture/China National Rice improvement Centre, National Rice Research Institute, Hangzhou, 310006, P. R. China.
Guiai JiaoState Key Laboratory of Rice Biology/Key Laboratory of Rice Biology and Breeding, Ministry of Agriculture/China National Rice improvement Centre, National Rice Research Institute, Hangzhou, 310006, P. R. China.
Lihong XieState Key Laboratory of Rice Biology/Key Laboratory of Rice Biology and Breeding, Ministry of Agriculture/China National Rice improvement Centre, National Rice Research Institute, Hangzhou, 310006, P. R. China.
Shikai HuState Key Laboratory of Rice Biology/Key Laboratory of Rice Biology and Breeding, Ministry of Agriculture/China National Rice improvement Centre, National Rice Research Institute, Hangzhou, 310006, P. R. China.
Zhonghua ShengState Key Laboratory of Rice Biology/Key Laboratory of Rice Biology and Breeding, Ministry of Agriculture/China National Rice improvement Centre, National Rice Research Institute, Hangzhou, 310006, P. R. China. shengzhonghua666@163.com.
Peisong HuState Key Laboratory of Rice Biology/Key Laboratory of Rice Biology and Breeding, Ministry of Agriculture/China National Rice improvement Centre, National Rice Research Institute, Hangzhou, 310006, P. R. China. peisonghu@126.com.
China National Rice Research Institute · CNJiangxi Agricultural University · CNRice Research Institute · CN

Funding

National Key Research and Development Program of China 2017YFD0100300National Natural Science Foundation of China No.31871597National Science and Technology Major Project 2016ZX08001006Natural Science Foundation of Jiangxi Province 20232BAB215027Science and Technology Program of Zhejiang Province No: LGN18C130006
6 · The paper itself

Abstract

As the source of isoprenoid precursors, the plastidial methylerythritol phosphate (MEP) pathway plays an essential role in plant development. Here, we report a novel rice (Oryza sativa L.) mutant ygl3 (yellow-green leaf3) that exhibits yellow-green leaves and lower photosynthetic efficiency compared to the wild type due to abnormal chloroplast ultrastructure and reduced chlorophyll content. Map-based cloning showed that YGL3, one of the major genes involved in the MEP pathway, encodes 4-hydroxy-3-methylbut-2-enyl diphosphate reductase, which is localized in the thylakoid membrane. A single base substitution in ygl3 plants resulted in lower 4-hydroxy-3-methylbut-2-enyl diphosphate reductase activity and lower contents of isopentenyl diphosphate (IPP) compared to the wild type. The transcript levels of genes involved in the syntheses of chlorophyll and thylakoid membrane proteins were significantly reduced in the ygl3 mutant compared to the wild type. The phytochrome interacting factor-like gene OsPIL11 regulated chlorophyll synthesis during the de-etiolation process by directly binding to the promoter of YGL3 to activate its expression. The findings provides a theoretical basis for understanding the molecular mechanisms by which the MEP pathway regulate chloroplast development in rice.

Indexed as

Chloroplast DevelopmentEnzyme ActivityIsopentenyl Diphosphate ContentIsoprenoidsMEP PathwayOryza sativa LOsPIL11ygl3

Identifiers

PMID38228921
PMCPMC10792152
OpenAlexW4390951263

What Socratic holds

Textmetadata
LicenceCC BY
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the Socratic graph.