Evidence map›Paper›PMID 38245838›Full record

ArticleGenome biology and evolution2024

Transposon Removal Reveals Their Adaptive Fitness Contribution.

Susanne Cranz-Mileva, Eve Reilly, Noor Chalhoub, Rohan Patel, Tania Atanassova, Weihuan Cao, Christopher Ellison, Mikel Zaratiegui

Open access · goldAbstract read
In one paragraph

Article in Genome biology and evolution, 2024. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 7 papers.

0numbers the graph read from it
0cells of the map it votes in
7citing papers in PubMed
4.2field-weighted citation impact, top 7% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

7 citing papers in PubMed, 8 citations in OpenAlex.

  1. Article
  2. Article
  3. Comparative genomic analysis of fiveMicrobial genomics · 2025
    Article
  4. Article
  5. Gag proteins encoded by endogenous retroviruses are required for zebrafish development.Proceedings of the National Academy of Sciences of the United States of America · 2025
    Article
  6. Article
  7. Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

8 authors at 1 institution in 1 country.

Susanne Cranz-MilevaDepartment of Molecular Biology and Biochemistry, Rutgers, the State University of New Jersey, Piscataway, NJ, USA.
Eve ReillyDepartment of Molecular Biology and Biochemistry, Rutgers, the State University of New Jersey, Piscataway, NJ, USA.
Noor ChalhoubDepartment of Molecular Biology and Biochemistry, Rutgers, the State University of New Jersey, Piscataway, NJ, USA.
Rohan PatelDepartment of Molecular Biology and Biochemistry, Rutgers, the State University of New Jersey, Piscataway, NJ, USA.
Tania AtanassovaDepartment of Molecular Biology and Biochemistry, Rutgers, the State University of New Jersey, Piscataway, NJ, USA.
Weihuan CaoDepartment of Genetics, Rutgers, the State University of New Jersey, Piscataway, NJ, USA.
Christopher EllisonDepartment of Genetics, Rutgers, the State University of New Jersey, Piscataway, NJ, USA.
Mikel ZaratieguiDepartment of Molecular Biology and Biochemistry, Rutgers, the State University of New Jersey, Piscataway, NJ, USA.ORCID 0000-0002-0342-0268
Rutgers, The State University of New Jersey · US

Funding

The cross-regulation of host DNA replication and LTR RetrotransposonsR35GM131763 · NIGMS · RUTGERS, THE STATE UNIV OF N.J. · PI ZARATIEGUI BIURRUN, MIGUEL ANGEL · 2019 to 2023
$2.0M
NIGMS NIH HHS R35 GM131763
6 · The paper itself

Abstract

Transposable elements are molecular parasites that persist in their host genome by generating new copies to outpace natural selection. Transposable elements exert a large influence on host genome evolution, in some cases providing adaptive changes. Here we measure the fitness effect of the transposable element insertions in the fission yeast Schizosaccharomyces pombe type strain by removing all insertions of its only native transposable element family, the long terminal repeat retrotransposon Tf2. We show that Tf2 elements provide a positive fitness contribution to its host. Tf2 ablation results in changes to the regulation of a mitochondrial gene and, consistently, the fitness effect are sensitive to growth conditions. We propose that Tf2 influences host fitness in a directed manner by dynamically rewiring the transcriptional response to metabolic stress.

Indexed as

DNA Transposable ElementsSchizosaccharomycesRetroelementsTerminal Repeat SequencesDNA Transposable ElementsRetroelementsevolutionfitnesstransposons

Identifiers

PMID38245838
PMCPMC10836971
OpenAlexW4391065306

What Socratic holds

Textmetadata
LicenceCC BY
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the Socratic graph.