Evidence map›Paper›PMID 38254205›Full record

ArticleEpigenetics & chromatin2024

Chromatin accessibility and cell cycle progression are controlled by the HDAC-associated Sin3B protein in murine hematopoietic stem cells.

Alexander Calderon, Tamara Mestvirishvili, Francesco Boccalatte, Kelly V Ruggles, Gregory David

Open access · goldAbstract read
In one paragraph

Article in Epigenetics & chromatin, 2024. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 2 papers.

0numbers the graph read from it
0cells of the map it votes in
2citing papers in PubMed
0.2field-weighted citation impact, top 47% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

2 citing papers in PubMed, 1 citations in OpenAlex.

  1. Review
  2. Review
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

5 authors at 1 institution in 1 country.

Alexander CalderonDepartment of Biochemistry and Molecular Pharmacology, New York University Grossman School of Medicine, NYU Langone Health, New York, NY, 10016, USA.
Tamara MestvirishviliDepartment of Medicine, New York University Grossman School of Medicine, NYU Langone Health, New York, NY, 10016, USA.
Francesco BoccalatteDepartment of Pathology, New York University Grossman School of Medicine, NYU Langone Health, New York, NY, 10016, USA.
Kelly V RugglesDepartment of Medicine, New York University Grossman School of Medicine, NYU Langone Health, New York, NY, 10016, USA.
Gregory DavidDepartment of Biochemistry and Molecular Pharmacology, New York University Grossman School of Medicine, NYU Langone Health, New York, NY, 10016, USA. gregory.david@nyulangone.org.
New York University · US

Funding

Project 3: The Evolving Role of Regional Lymph Nodes in Melanoma ProgressionU54CA263001 · NCI · NEW YORK UNIVERSITY SCHOOL OF MEDICINE · PI Kelly Valentine Ruggles · 2022 to 2026
$11.6M
Regulation of Cellular Senescence and Oncogenic Transformation by Sin3B.R01CA148639 · NCI · NEW YORK UNIVERSITY SCHOOL OF MEDICINE · PI DAVID, GREGORY · 2011 to 2015
$2.0M
Probing the coordination of cell cycle progression and differentiation in hematopoietic stem cellsR56HL163940 · NHLBI · NEW YORK UNIVERSITY SCHOOL OF MEDICINE · PI DAVID, GREGORY · 2022 to 2022
$539k
Targeting the HMGB1-TLR5 pathway to prevent senescence-induced metastasis in breast cancer.R03CA269552 · NCI · NEW YORK UNIVERSITY SCHOOL OF MEDICINE · PI DAVID, GREGORY · 2023 to 2024
$170k
The role of Sin3B in coordinating cell cycle exit and differentiation in hematopoiesisF31CA232659 · NCI · NEW YORK UNIVERSITY SCHOOL OF MEDICINE · PI CALDERON, ALEXANDER · 2018 to 2021
$149k
NCI NIH HHS F31 CA232659NCI NIH HHS R01 CA148639NCI NIH HHS R03 CA269552NCI NIH HHS U54 CA263001NHLBI NIH HHS R56 HL163940NHLBI NIH HHS R56HL163940NIH HHS F31CA232659NIH HHS R01CA148639
6 · The paper itself

Abstract

backgroundBlood homeostasis requires the daily production of millions of terminally differentiated effector cells that all originate from hematopoietic stem cells (HSCs). HSCs are rare and exhibit unique self-renewal and multipotent properties, which depend on their ability to maintain quiescence through ill-defined processes. Defective control of cell cycle progression can eventually lead to bone marrow failure or malignancy. In particular, the molecular mechanisms tying cell cycle re-entry to cell fate commitment in HSCs remain elusive. Previous studies have identified chromatin coordination as a key regulator of differentiation in embryonic stem cells.

resultsHere, we utilized genetic inactivation of the chromatin-associated Sin3B protein to manipulate cell cycle control and found dysregulated chromatin accessibility and cell cycle progression in HSCs. Single cell transcriptional profiling of hematopoietic stem and progenitor cells (HSPCs) inactivated for Sin3B reveals aberrant progression through the G

conclusionsOur findings provide new insights into controlled cell cycle progression as a potential regulator of HSC lineage commitment through the modulation of chromatin features.

Indexed as

ChromatinEmbryonic Stem CellsAnimalsCell CycleCell DifferentiationHematopoietic Stem CellsHistone DeacetylasesMiceRepressor ProteinsChromatinHistone DeacetylasesRepressor ProteinsSin3b protein, mouseCell cycleChromatinDifferentiationHematopoiesisStem cells

Identifiers

PMID38254205
PMCPMC10804615
OpenAlexW4391116356

What Socratic holds

Textmetadata
LicenceCC BY
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the Socratic graph.