Evidence map›Paper›PMID 38259468›Full record

ArticleFrontiers in immunology2023

Pharmacogenomics of intravenous immunoglobulin response in Kawasaki disease.

Sadeep Shrestha, Howard W Wiener, Hidemi Kajimoto, Vinodh Srinivasasainagendra, Dolena Ledee, Sabrina Chowdhury, Jinhong Cui, Jake Y Chen, Mikayla A Beckley, Luz A Padilla and 3 more

Open access · goldAbstract read
In one paragraph

Article in Frontiers in immunology, 2023. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 6 papers, 2 of them syntheses that pooled it.

0numbers the graph read from it
0cells of the map it votes in
6citing papers in PubMed, 2 pooled it
4.0field-weighted citation impact, top 7% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

6 citing papers in PubMed, 2 syntheses or guidelines pooled it, 7 citations in OpenAlex.

  1. Prognostic significance of systemic immune-inflammation index in hepatocellular carcinoma: a meta-analysis.Clinical & translational oncology : official publication of the Federation of Spanish Oncology Societies and of the National Cancer Institute of Mexico · 2026
    Pooled it
  2. Guideline
  3. Article
  4. Article
  5. Article
  6. Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

13 authors at 4 institutions in 2 countries.

Sadeep ShresthaDepartment of Epidemiology, School of Public Health, University of Alabama at Birmingham, Birmingham, AL, United States.
Howard W WienerDepartment of Epidemiology, School of Public Health, University of Alabama at Birmingham, Birmingham, AL, United States.
Hidemi KajimotoDivision of Cardiology, Seattle Children's and University of Washington Department of Pediatrics, Seattle, WA, United States.
Vinodh SrinivasasainagendraDepartment of Biostatistics, School of Public Health, University of Alabama at Birmingham, Birmingham, AL, United States.
Dolena LedeeDivision of Cardiology, Seattle Children's and University of Washington Department of Pediatrics, Seattle, WA, United States.
Sabrina ChowdhuryDepartment of Epidemiology, School of Public Health, University of Alabama at Birmingham, Birmingham, AL, United States.
Jinhong CuiDepartment of Biostatistics, School of Public Health, University of Alabama at Birmingham, Birmingham, AL, United States.
Jake Y ChenInformatics Institute, School of Medicine, University of Alabama at Birmingham, Birmingham, AL, United States.
Mikayla A BeckleyDivision of Cardiology, Seattle Children's and University of Washington Department of Pediatrics, Seattle, WA, United States.
Luz A PadillaDepartment of Epidemiology, School of Public Health, University of Alabama at Birmingham, Birmingham, AL, United States.
Nagib DahdahCHU Ste-Justine, Universite de Montreal, Montreal, QC, Canada.
Hemant K TiwariDepartment of Biostatistics, School of Public Health, University of Alabama at Birmingham, Birmingham, AL, United States.
Michael A PortmanDivision of Cardiology, Seattle Children's and University of Washington Department of Pediatrics, Seattle, WA, United States.
University of Alabama at Birmingham · USSeattle Children's Hospital · USUniversity of Washington · USUniversité de Montréal · CA

Funding

Training In Cardiovascular Physiology & PharmacologyT32HL007444 · NHLBI · UNIVERSITY OF CALIFORNIA, SAN DIEGO · PI Ju Chen, Robert Scott Ross · 1985 to 2026
$11.1M
Genetic Prediction for Treatment Resistance in Kawasaki DiseaseR01HL146130 · NHLBI · SEATTLE CHILDREN'S HOSPITAL · PI PORTMAN, MICHAEL A, SHRESTHA, SADEEP · 2019 to 2022
$3.6M
UCSD PRIDE Faculty Development Program in Cardiovascular SciencesR25HL145817 · NHLBI · UNIVERSITY OF CALIFORNIA, SAN DIEGO · PI Robert Scott Ross, Joann Trejo · 2019 to 2026
$3.3M
NHLBI NIH HHS R01 HL146130NHLBI NIH HHS R25 HL145817NHLBI NIH HHS T32 HL007444
6 · The paper itself

Abstract

Introduction: Kawasaki disease (KD) is a diffuse vasculitis in children. Response to high dose intravenous gamma globulin (IVIG), the primary treatment, varies according to genetic background. We sought to identify genetic loci, which associate with treatment response using whole genome sequencing (WGS). Method: We performed WGS in 472 KD patients with 305 IVIG responders and 167 non-responders defined by AHA clinical criteria. We conducted logistic regression models to test additive genetic effect in the entire cohort and in four subgroups defined by ancestry information markers (Whites, African Americans, Asians, and Hispanics). We performed functional mapping and annotation using FUMA to examine genetic variants that are potentially involved IVIG non-response. Further, we conducted SNP-set [Sequence] Kernel Association Test (SKAT) for all rare and common variants. Results: Of the 43,288,336 SNPs (23,660,970 in intergenic regions, 16,764,594 in introns and 556,814 in the exons) identified, the top ten hits associated with IVIG non-response were in Conclusions: This WGS study identified multiple predominantly novel understudied genes associated with IVIG response. These data can serve to inform regarding pathogenesis of KD, as well as lay ground work for developing treatment response predictors.

Indexed as

Mucocutaneous Lymph Node SyndromeChildExonsHumansImmunoglobulins, IntravenousIntronsPharmacogeneticsProtein Phosphatase 2Immunoglobulins, IntravenousPPP2R5E protein, humanProtein Phosphatase 2ancestryIVIG refractoryKawasaki diseasePharmacaeconomicswhole genome sequencing

Identifiers

PMID38259468
PMCPMC10800400
OpenAlexW4390665004

What Socratic holds

Textmetadata
LicenceCC BY
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the Socratic graph.