Evidence map›Paper›PMID 38277014›Full record

ArticleApplied microbiology and biotechnology2024

Expression and purification of epinecidin-1 variant (Ac-Var-1) by acid cleavage.

Sivakumar Jeyarajan, Ansu Susan Peter, Aswathy Sathyan, Sukumar Ranjith, Indira Kandasamy, Senbagam Duraisamy, Prahalathan Chidambaram, Anbarasu Kumarasamy

Open access · goldAbstract read
In one paragraph

Article in Applied microbiology and biotechnology, 2024. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 6 papers.

0numbers the graph read from it
0cells of the map it votes in
6citing papers in PubMed
4.8field-weighted citation impact, top 5% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

6 citing papers in PubMed, 14 citations in OpenAlex.

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4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

8 authors at 2 institutions in 2 countries.

Sivakumar Jeyarajan *Microbial Biotechnology Laboratory, Department of Marine Biotechnology, Bharathidasan University, Tiruchirappalli, Tamil Nadu, India.
Ansu Susan Peter *Microbial Biotechnology Laboratory, Department of Marine Biotechnology, Bharathidasan University, Tiruchirappalli, Tamil Nadu, India.
Aswathy SathyanMicrobial Biotechnology Laboratory, Department of Marine Biotechnology, Bharathidasan University, Tiruchirappalli, Tamil Nadu, India.
Sukumar RanjithMicrobial Biotechnology Laboratory, Department of Marine Biotechnology, Bharathidasan University, Tiruchirappalli, Tamil Nadu, India.
Indira KandasamyMicrobial Biotechnology Laboratory, Department of Marine Biotechnology, Bharathidasan University, Tiruchirappalli, Tamil Nadu, India.
Senbagam DuraisamyMicrobial Biotechnology Laboratory, Department of Marine Biotechnology, Bharathidasan University, Tiruchirappalli, Tamil Nadu, India.
Prahalathan ChidambaramDepartment of Biochemistry, Bharathidasan University, Tiruchirappalli, Tamil Nadu, India.
Anbarasu KumarasamyMicrobial Biotechnology Laboratory, Department of Marine Biotechnology, Bharathidasan University, Tiruchirappalli, Tamil Nadu, India. anbumbt@bdu.ac.in.ORCID http://orcid.org/0000-0002-1666-6742
Bharathidasan University · INUniversity of Michigan · US

Funding

DBT-BBE Project Ref. No. BT/PR2071/BBE/117/241/2016ICMR-NET (ICMR-NET- 61754/2010)RUSA 2.0 Biological Sciences Ref. No. 311/RUSA (2.0)/2018Tamil Nadu State Council for Higher Education Ref. No. 01706/P6/2021
6 · The paper itself

Abstract

The demand for massive quantities of therapeutic active antimicrobial peptides (AMPs) is high due to their potential as alternatives to antibiotics. However, each antimicrobial peptide has unique properties, necessitating distinct synthesis and purification strategies for their large-scale production. In this study, we bio-synthesized and purified a functional enhanced variant of the AMP epinecidin-1, known as Ac-Var-1 (acid-cleavable variant-1). To generate the active peptide, we cloned the gene for Ac-Var-1 with acid-cleavable site (aspartic acid-proline) into the pET-32a expression vector, purified the fusion protein by His tag enrichment chromatography, and performed acid cleavage to release the active Ac-Var-1 peptide. After acid cleavage, the active Ac-Var-1 was purified and characterized by SDS-PAGE and mass spectrometry. The results from both techniques provided confirmation of the intactness of the purified Ac-Var-1. The Ac-Var-1 inhibited the growth of pathogenic Escherichia coli and Staphylococcus aureus. KEY POINTS : • Epinecidin-1 is a well-known antimicrobial peptide having multipotential bioactivities. • Epinecidin-1 variant is developed via the site-directed mutagenesis method to improve its structural stability and bioactivity. • AC-Var-1 development is an economical and easy method to remove peptide from tag protein.

Indexed as

Antimicrobial Cationic PeptidesStaphylococcal InfectionsAnti-Bacterial AgentsElectrophoresis, Polyacrylamide GelEscherichia coliHumansRecombinant Fusion ProteinsAnti-Bacterial AgentsAntimicrobial Cationic PeptidesRecombinant Fusion ProteinsAcid cleavageAntimicrobial peptidesEpinecidin-1His tagRecombinant fusion protein

Identifiers

PMID38277014
PMCPMC10817847
OpenAlexW4391258892

What Socratic holds

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LicenceCC BY
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Registered trials

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Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the Socratic graph.