Evidence map›Paper›PMID 38278952›Full record

ArticleNature plants2024

A designer synthetic chromosome fragment functions in moss.

Lian-Ge Chen, Tianlong Lan, Shuo Zhang, Mengkai Zhao, Guangyu Luo, Yi Gao, Yuliang Zhang, Qingwei Du, Houze Lu, Bimeng Li and 8 more

Abstract read
PubMed Publisher
In one paragraph

Article in Nature plants, 2024. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 27 papers.

0numbers the graph read from it
0cells of the map it votes in
27citing papers in PubMed
–field-weighted citation impact
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

27 citing papers in PubMed.

  1. Article
  2. Review
  3. Review
  4. Article
  5. The Promise of Synthetic Biology for Redesigning Plant Architecture.International journal of molecular sciences · 2026
    Review
  6. Article
  7. Proceedings of the National Academy of Sciences of the United States of America · 2026
    Article
  8. Review
  9. Screening of Monokaryotic Strains ofJournal of fungi (Basel, Switzerland) · 2025
    Article
  10. Review
  11. Article
  12. Scaling DNA engineering.Trends in biotechnology · 2025
    Review
  13. The design and engineering of synthetic genomes.Nature reviews. Genetics · 2025
    Review
  14. Review
  15. Recent technology advancements in large-scale DNA assembly.Quantitative biology (Beijing, China) · 2025
    Article
  16. The switch-liker's guide to plant synthetic gene circuits.The Plant journal : for cell and molecular biology · 2025
    Review
  17. Review
  18. Article
  19. Can a plant biologist fix a thermostat?The New phytologist · 2025
    Review
  20. Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

18 authors.

Lian-Ge Chen *State Key Laboratory of Plant Genomics, Institute of Genetics and Developmental Biology, The Innovative Academy of Seed Design, Chinese Academy of Sciences, Beijing, China.ORCID http://orcid.org/0000-0002-4108-1682
Tianlong Lan *College of Life Sciences, University of Chinese Academy of Sciences, Beijing, China.ORCID http://orcid.org/0009-0007-9526-5181
Shuo Zhang *State Key Laboratory of Plant Genomics, Institute of Genetics and Developmental Biology, The Innovative Academy of Seed Design, Chinese Academy of Sciences, Beijing, China.ORCID http://orcid.org/0000-0002-6034-1398
Mengkai Zhao *College of Life Sciences and Oceanography, Shenzhen University, Shenzhen, China.ORCID http://orcid.org/0000-0002-7647-3520
Guangyu LuoCAS Key Laboratory of Quantitative Engineering Biology, Guangdong Provincial Key Laboratory of Synthetic Genomics and Shenzhen Key Laboratory of Synthetic Genomics, Shenzhen Institute of Synthetic Biology, Shenzhen Institute of Advanced Technology, Chinese Academy of Sciences, Shenzhen, China.ORCID http://orcid.org/0000-0003-2724-9466
Yi GaoCollege of Life Sciences, University of Chinese Academy of Sciences, Beijing, China.
Yuliang ZhangState Key Laboratory of Plant Genomics, Institute of Genetics and Developmental Biology, The Innovative Academy of Seed Design, Chinese Academy of Sciences, Beijing, China.
Qingwei DuState Key Laboratory of Plant Genomics, Institute of Genetics and Developmental Biology, The Innovative Academy of Seed Design, Chinese Academy of Sciences, Beijing, China.
Houze LuSchool of Earth and Space Sciences, Peking University, Beijing, China.ORCID http://orcid.org/0009-0008-0634-9154
Bimeng LiCollege of Life Sciences, University of Chinese Academy of Sciences, Beijing, China.ORCID http://orcid.org/0009-0000-9549-7977
Bingke JiaoState Key Laboratory of Plant Genomics, Institute of Genetics and Developmental Biology, The Innovative Academy of Seed Design, Chinese Academy of Sciences, Beijing, China.
Zhangli HuCollege of Life Sciences and Oceanography, Shenzhen University, Shenzhen, China.ORCID http://orcid.org/0000-0002-2596-8515
Yingxin MaCAS Key Laboratory of Quantitative Engineering Biology, Guangdong Provincial Key Laboratory of Synthetic Genomics and Shenzhen Key Laboratory of Synthetic Genomics, Shenzhen Institute of Synthetic Biology, Shenzhen Institute of Advanced Technology, Chinese Academy of Sciences, Shenzhen, China.
Qiao ZhaoCAS Key Laboratory of Quantitative Engineering Biology, Guangdong Provincial Key Laboratory of Synthetic Genomics and Shenzhen Key Laboratory of Synthetic Genomics, Shenzhen Institute of Synthetic Biology, Shenzhen Institute of Advanced Technology, Chinese Academy of Sciences, Shenzhen, China.ORCID http://orcid.org/0000-0002-0958-4300
Ying WangCollege of Life Sciences, University of Chinese Academy of Sciences, Beijing, China. yingwang@ucas.ac.cn.ORCID http://orcid.org/0000-0002-4981-2136
Wenfeng QianState Key Laboratory of Plant Genomics, Institute of Genetics and Developmental Biology, The Innovative Academy of Seed Design, Chinese Academy of Sciences, Beijing, China. wfqian@genetics.ac.cn.ORCID http://orcid.org/0000-0001-6875-0842
Junbiao DaiCollege of Life Sciences and Oceanography, Shenzhen University, Shenzhen, China. daijunbiao@caas.cn.ORCID http://orcid.org/0000-0002-5299-4700
Yuling JiaoState Key Laboratory of Plant Genomics, Institute of Genetics and Developmental Biology, The Innovative Academy of Seed Design, Chinese Academy of Sciences, Beijing, China. yuling.jiao@pku.edu.cn.ORCID http://orcid.org/0000-0002-1189-1676

Funding

Bureau of International Cooperation, Chinese Academy of Sciences 172644KYSB20180022China Postdoctoral Science Foundation 2020M680740National Natural Science Foundation of China (National Science Foundation of China) 31800082National Natural Science Foundation of China (National Science Foundation of China) 32270345
6 · The paper itself

Abstract

Rapid advances in DNA synthesis techniques have enabled the assembly and engineering of viral and microbial genomes, presenting new opportunities for synthetic genomics in multicellular eukaryotic organisms. These organisms, characterized by larger genomes, abundant transposons and extensive epigenetic regulation, pose unique challenges. Here we report the in vivo assembly of chromosomal fragments in the moss Physcomitrium patens, producing phenotypically virtually wild-type lines in which one-third of the coding region of a chromosomal arm is replaced by redesigned, chemically synthesized fragments. By eliminating 55.8% of a 155 kb endogenous chromosomal region, we substantially simplified the genome without discernible phenotypic effects, implying that many transposable elements may minimally impact growth. We also introduced other sequence modifications, such as PCRTag incorporation, gene locus swapping and stop codon substitution. Despite these substantial changes, the complex epigenetic landscape was normally established, albeit with some three-dimensional conformation alterations. The synthesis of a partial multicellular eukaryotic chromosome arm lays the foundation for the synthetic moss genome project (SynMoss) and paves the way for genome synthesis in multicellular organisms.

Indexed as

BryopsidaEpigenesis, GeneticChromosomesDNA Transposable ElementsGenomicsDNA Transposable Elements

Identifiers

What Socratic holds

Textmetadata
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the Socratic graph.