Evidence map›Paper›PMID 38290049›Full record

ArticleGenetics2024

A missense SNP in the tumor suppressor SETD2 reduces H3K36me3 and mitotic spindle integrity in Drosophila.

Jovan S Brockett, Tad Manalo, Hala Zein-Sabatto, Jina Lee, Junnan Fang, Philip Chu, Harry Feng, Dattatraya Patil, Priscilla Davidson, Kenneth Ogan and 8 more

Open access · bronzeAbstract read
In one paragraph

Article in Genetics, 2024. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 2 papers.

0numbers the graph read from it
0cells of the map it votes in
2citing papers in PubMed
0.2field-weighted citation impact, top 47% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

2 citing papers in PubMed, 1 citations in OpenAlex.

  1. Review
  2. Review
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

18 authors at 1 institution in 1 country.

Jovan S BrockettDepartment of Cell Biology, Emory University School of Medicine, Atlanta, GA 30322, USA.ORCID 0000-0002-0665-553X
Tad ManaloDepartment of Urology, Emory University School of Medicine, Atlanta, GA 30322, USA.
Hala Zein-SabattoDepartment of Cell Biology, Emory University School of Medicine, Atlanta, GA 30322, USA.
Jina LeeDepartment of Cell Biology, Emory University School of Medicine, Atlanta, GA 30322, USA.ORCID 0000-0002-4362-9998
Junnan FangDepartment of Cell Biology, Emory University School of Medicine, Atlanta, GA 30322, USA.ORCID 0000-0002-8534-0498
Philip ChuDepartment of Urology, Emory University School of Medicine, Atlanta, GA 30322, USA.
Harry FengDepartment of Urology, Emory University School of Medicine, Atlanta, GA 30322, USA.
Dattatraya PatilDepartment of Urology, Emory University School of Medicine, Atlanta, GA 30322, USA.
Priscilla DavidsonDepartment of Urology, Emory University School of Medicine, Atlanta, GA 30322, USA.
Kenneth OganDepartment of Urology, Emory University School of Medicine, Atlanta, GA 30322, USA.
Viraj A MasterDepartment of Urology, Emory University School of Medicine, Atlanta, GA 30322, USA.
John G PattarasDepartment of Urology, Emory University School of Medicine, Atlanta, GA 30322, USA.
David L RobertsEmory University Department of Medicine, Division of General Internal Medicine, Atlanta, GA 30322, USA.
Sharon H BergquistEmory University Department of Medicine, Division of General Internal Medicine, Atlanta, GA 30322, USA.
Matthew A ReynaDepartment of Biomedical Informatics, Emory University School of Medicine, Atlanta, GA 30322, USA.
John A PetrosDepartment of Urology, Emory University School of Medicine, Atlanta, GA 30322, USA.
Dorothy A LeritDepartment of Cell Biology, Emory University School of Medicine, Atlanta, GA 30322, USA.ORCID 0000-0002-3362-8078
Rebecca S ArnoldDepartment of Urology, Emory University School of Medicine, Atlanta, GA 30322, USA.
Emory University · US

Funding

Implementing a Maternal health and PRegnancy Outcomes Vision for Everyone (IMPROVE)UL1TR002378 · NCATS · EMORY UNIVERSITY · PI Andres J Garcia, Elizabeth O. Ofili · 2017 to 2026
$92.1M
Winship Cancer Institute Cancer Center Support GrantP30CA138292 · NCI · EMORY UNIVERSITY · PI Ragini Reiney Kudchadkar · 2009 to 2026
$47.5M
IRACDA Fellowships in Research and Science Training (FIRST)K12GM000680 · NIGMS · EMORY UNIVERSITY · PI BROWN, LOU ANN S, MCCARTY, NAEL A · 2000 to 2024
$41.2M
Resource Component: Acquisition, maintenance and distribution of Drosophila stocksP40OD018537 · OD · TRUSTEES OF INDIANA UNIVERSITY · PI Annette L. Parks · 2014 to 2026
$13.5M
Post-transcriptional mechanisms of centrosome regulationR01GM138544 · NIGMS · EMORY UNIVERSITY · PI LERIT, DOROTHY A · 2020 to 2024
$1.8M
Isoform expression and post-transcriptional regulation of centrosomal plp mRNAK99GM143517 · NIGMS · EMORY UNIVERSITY · PI FANG, JUNNAN · 2022 to 2023
$225k
Novel Diagnostic Tests for Renal Cell CarcinomaI01BX003367 · VA · VETERANS HEALTH ADMINISTRATION · PI PETROS, JOHN A. · 2016 to 2019
–
BLRD VA I01 BX003367NCATS NIH HHS UL1 TR002378NCI NIH HHS P30 CA138292NIGMS NIH HHS K12 GM000680NIGMS NIH HHS K99 GM143517NIGMS NIH HHS R01 GM138544NIH HHS P40 OD018537NIH HHS UL1TR002378
6 · The paper itself

Abstract

Mutations in SETD2 are among the most prevalent drivers of renal cell carcinoma (RCC). We identified a novel single nucleotide polymorphism (SNP) in SETD2, E902Q, within a subset of RCC patients, which manifests as both an inherited or tumor-associated somatic mutation. To determine if the SNP is biologically functional, we used CRISPR-based genome editing to generate the orthologous mutation within the Drosophila melanogaster Set2 gene. In Drosophila, the homologous amino acid substitution, E741Q, reduces H3K36me3 levels comparable to Set2 knockdown, and this loss is rescued by reintroduction of a wild-type Set2 transgene. We similarly uncovered significant defects in spindle morphogenesis, consistent with the established role of SETD2 in methylating α-Tubulin during mitosis to regulate microtubule dynamics and maintain genome stability. These data indicate the Set2 E741Q SNP affects both histone methylation and spindle integrity. Moreover, this work further suggests the SETD2 E902Q SNP may hold clinical relevance.

Indexed as

Carcinoma, Renal CellDrosophila ProteinsKidney NeoplasmsAnimalsDrosophilaDrosophila melanogasterHistone-Lysine N-MethyltransferaseHistonesHumansPolymorphism, Single NucleotideSpindle ApparatusDrosophila ProteinsHistone-Lysine N-MethyltransferaseHistonesSet2 protein, DrosophilaDrosophilaH3K36me3models of human diseaserenal cell carcinomaSETD2SNP

Identifiers

PMID38290049
PMCPMC10990431
OpenAlexW4391339812

What Socratic holds

Textmetadata
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the Socratic graph.