Evidence map›Paper›PMID 38294121›Full record

ArticleJournal of cell science2024

Exploring the ATG9A interactome uncovers interaction with VPS13A.

Alexander R van Vliet, Harold B J Jefferies, Peter A Faull, Jessica Chadwick, Fairouz Ibrahim, Mark J Skehel, Sharon A Tooze

Open access · hybridAbstract read
In one paragraph

Article in Journal of cell science, 2024. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 13 papers.

0numbers the graph read from it
0cells of the map it votes in
13citing papers in PubMed
5.9field-weighted citation impact, top 3% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

13 citing papers in PubMed, 18 citations in OpenAlex.

  1. Review
  2. Article
  3. Article
  4. ATG9 inhibitsAutophagy · 2025
    Article
  5. Article
  6. Progress on multifunctional transmembrane protein ATG9A.Cell communication and signaling : CCS · 2025
    Review
  7. Article
  8. Review
  9. CaScientific reports · 2024
    Article
  10. Article
  11. Article
  12. Article
  13. ER-driven Contact Sites in Autophagosome Biogenesis Sequence.Contact (Thousand Oaks (Ventura County, Calif.))
    Review
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

7 authors at 2 institutions in 1 country.

Alexander R van VlietMolecular Cell Biology of Autophagy, The Francis Crick Institute, London NW1 1AT, UK.ORCID 0000-0003-4729-4379
Harold B J JefferiesMolecular Cell Biology of Autophagy, The Francis Crick Institute, London NW1 1AT, UK.
Peter A FaullProteomics Science Technology Platform, The Francis Crick Institute, London NW1 1AT, UK.
Jessica ChadwickMRC Laboratory of Molecular Biology, Cambridge CB2 0QH, UK.
Fairouz IbrahimProteomics Science Technology Platform, The Francis Crick Institute, London NW1 1AT, UK.
Mark J SkehelProteomics Science Technology Platform, The Francis Crick Institute, London NW1 1AT, UK.
Sharon A ToozeMolecular Cell Biology of Autophagy, The Francis Crick Institute, London NW1 1AT, UK.ORCID 0000-0002-2182-3116
The Francis Crick Institute · GBMRC Laboratory of Molecular Biology · GB

Funding

Cancer Research UK CC2134Cancer Research UK FC001187European Research CouncilEuropean Research Council 788708Medical Research Council CC2134Medical Research Council FC001187Medical Research Council MC_U105178783Wellcome Trust CC2058Wellcome Trust CC2134Wellcome Trust FC001187
6 · The paper itself

Abstract

ATG9A, a transmembrane protein of the core autophagy pathway, cycles between the Golgi, endosomes and a vesicular compartment. ATG9A was recently shown to act as a lipid scramblase, and this function is thought to require its interaction with another core autophagy protein, ATG2A, which acts as a lipid transfer protein. Together, ATG9A and ATG2A are proposed to function to expand the growing autophagosome. However, ATG9A is implicated in other pathways including membrane repair and lipid droplet homeostasis. To elucidate other ATG9A interactors within the autophagy pathway, or interactors beyond autophagy, we performed an interactome analysis through mass spectrometry. This analysis revealed a host of proteins involved in lipid synthesis and trafficking, including ACSL3, VPS13A and VPS13C. Furthermore, we show that ATG9A directly interacts with VPS13A and forms a complex that is distinct from the ATG9A-ATG2A complex.

Indexed as

Membrane ProteinsVesicular Transport ProteinsAutophagosomesAutophagyAutophagy-Related ProteinsLipidsAutophagy-Related ProteinsLipidsMembrane ProteinsVesicular Transport ProteinsATG9A interactomeAutophagyLipid traffickingMass spectrometryVPS13

Identifiers

PMID38294121
PMCPMC10911177
OpenAlexW4391388029

What Socratic holds

Textmetadata
LicenceCC BY
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the Socratic graph.