Evidence map›Paper›PMID 38304032›Full record

ArticleFrontiers in oncology2023

Tumor-associated microbiome features of metastatic colorectal cancer and clinical implications.

Ho Jung An, Mira A Partha, HoJoon Lee, Billy T Lau, Dmitri S Pavlichin, Alison Almeda, Anna C Hooker, Giwon Shin, Hanlee P Ji

Open access · goldAbstract read
In one paragraph

Article in Frontiers in oncology, 2023. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 17 papers.

0numbers the graph read from it
0cells of the map it votes in
17citing papers in PubMed
2.1field-weighted citation impact, top 14% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

17 citing papers in PubMed, 9 citations in OpenAlex.

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  5. The Phylum Fusobacteriota Is Associated with Colorectal Cancer-Specific Mortality: Results from the Translational Research Program in Cancer Differences across Populations.Cancer epidemiology, biomarkers & prevention : a publication of the American Association for Cancer Research, cosponsored by the American Society of Preventive Oncology · 2026
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  17. American journal of cancer research · 2024
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4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

9 authors at 2 institutions in 1 country.

Ho Jung AnDepartment of Medical Oncology, St. Vincent's Hospital, College of Medicine, The Catholic University of Korea, Seoul, Republic of Korea.
Mira A ParthaDepartment of Electrical Engineering, Stanford University, Palo Alto, CA, United States.
HoJoon LeeDivision of Oncology, Department of Medicine, Stanford University School of Medicine, Palo Alto, CA, United States.
Billy T LauDivision of Oncology, Department of Medicine, Stanford University School of Medicine, Palo Alto, CA, United States.
Dmitri S PavlichinDivision of Oncology, Department of Medicine, Stanford University School of Medicine, Palo Alto, CA, United States.
Alison AlmedaDivision of Oncology, Department of Medicine, Stanford University School of Medicine, Palo Alto, CA, United States.
Anna C HookerDivision of Oncology, Department of Medicine, Stanford University School of Medicine, Palo Alto, CA, United States.
Giwon ShinDivision of Oncology, Department of Medicine, Stanford University School of Medicine, Palo Alto, CA, United States.
Hanlee P JiDivision of Oncology, Department of Medicine, Stanford University School of Medicine, Palo Alto, CA, United States.
Stanford University · USPalo Alto University · US

Funding

No grant is acknowledged in the PubMed record.

6 · The paper itself

Abstract

Background: Colon microbiome composition contributes to the pathogenesis of colorectal cancer (CRC) and prognosis. We analyzed 16S rRNA sequencing data from tumor samples of patients with metastatic CRC and determined the clinical implications. Materials and methods: We enrolled 133 patients with metastatic CRC at St. Vincent Hospital in Korea. The V3-V4 regions of the 16S rRNA gene from the tumor DNA were amplified, sequenced on an Illumina MiSeq, and analyzed using the DADA2 package. Results: After excluding samples that retained <5% of the total reads after merging, 120 samples were analyzed. The median age of patients was 63 years (range, 34-82 years), and 76 patients (63.3%) were male. The primary cancer sites were the right colon (27.5%), left colon (30.8%), and rectum (41.7%). All subjects received 5-fluouracil-based systemic chemotherapy. After removing genera with <1% of the total reads in each patient, 523 genera were identified. Rectal origin, high CEA level (≥10 ng/mL), and presence of lung metastasis showed higher richness. Survival analysis revealed that the presence of Conclusion: Tumor microbiome features may be useful prognostic biomarkers for metastatic CRC.

Indexed as

adenocarcinomacolonmetastasisrectumtissue microbiome

Identifiers

PMID38304032
PMCPMC10833227
OpenAlexW4390986322

What Socratic holds

Textmetadata
LicenceCC BY
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the Socratic graph.