Evidence map›Paper›PMID 38306272›Full record

ArticleCell reports2024

An extended wave of global mRNA deadenylation sets up a switch in translation regulation across the mammalian oocyte-to-embryo transition.

Katherine Lee, Kyucheol Cho, Robert Morey, Heidi Cook-Andersen

Open access · goldAbstract read
In one paragraph

Article in Cell reports, 2024. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 14 papers.

0numbers the graph read from it
0cells of the map it votes in
14citing papers in PubMed
4.4field-weighted citation impact, top 5% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

14 citing papers in PubMed, 20 citations in OpenAlex.

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4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

4 authors at 1 institution in 1 country.

Katherine LeeDepartment of Molecular Biology, University of California, San Diego, La Jolla, CA 92093, USA.
Kyucheol ChoDepartment of Obstetrics, Gynecology, and Reproductive Sciences, School of Medicine, University of California, San Diego, La Jolla, CA 92093, USA.
Robert MoreyDepartment of Pathology, School of Medicine, University of California, San Diego, La Jolla, CA 92093, USA.
Heidi Cook-AndersenDepartment of Obstetrics, Gynecology, and Reproductive Sciences, School of Medicine, University of California, San Diego, La Jolla, CA 92093, USA; Department of Molecular Biology, University of California, San Diego, La Jolla, CA 92093, USA. Electronic address: hcookandersen@health.ucsd.edu.
University of California San Diego · US

Funding

TRAINING IN REPRODUCTIVE SCIENCEST32HD007203 · NICHD · UNIVERSITY OF CALIFORNIA, SAN DIEGO · PI PAMELA L MELLON · 1988 to 2026
$4.8M
The Role of NMD in Embryonic DevelopmentR01HD093846 · NICHD · UNIVERSITY OF CALIFORNIA, SAN DIEGO · PI WILKINSON, MILES FROME · 2018 to 2022
$2.3M
Mechanisms driving the transition from oocyte to embryo: The role of the mRNA decay activator ZFP36L2.R01GM124519 · NIGMS · UNIVERSITY OF CALIFORNIA, SAN DIEGO · PI COOK-ANDERSEN, HEIDI · 2018 to 2022
$1.7M
Mechanisms Linking Global Transcriptional Silencing and Zygotic Gene Activation During the Oocyte-to-Embryo Transition in MammalsF30HD100126 · NICHD · UNIVERSITY OF CALIFORNIA, SAN DIEGO · PI LEE, KATHERINE · 2019 to 2022
$167k
The Role of NMD in Pre-Implantation DevelopmentF30HD089579 · NICHD · UNIVERSITY OF CALIFORNIA, SAN DIEGO · PI CHOUSAL, JENNIFER · 2016 to 2018
$110k
NICHD NIH HHS F30 HD089579NICHD NIH HHS F30 HD100126NICHD NIH HHS R01 HD093846NICHD NIH HHS T32 HD007203NIGMS NIH HHS R01 GM124519
6 · The paper itself

Abstract

Without new transcription, gene expression across the oocyte-to-embryo transition (OET) relies instead on regulation of mRNA poly(A) tails to control translation. However, how tail dynamics shape translation across the OET in mammals remains unclear. We perform long-read RNA sequencing to uncover poly(A) tail lengths across the mouse OET and, incorporating published ribosome profiling data, provide an integrated, transcriptome-wide analysis of poly(A) tails and translation across the entire transition. We uncover an extended wave of global deadenylation during fertilization in which short-tailed, oocyte-deposited mRNAs are translationally activated without polyadenylation through resistance to deadenylation. Subsequently, in the embryo, mRNAs are readenylated and translated in a surge of global polyadenylation. We further identify regulation of poly(A) tail length at the isoform level and stage-specific enrichment of mRNA sequence motifs among regulated transcripts. These data provide insight into the stage-specific mechanisms of poly(A) tail regulation that orchestrate gene expression from oocyte to embryo in mammals.

Indexed as

Embryo, MammalianGene Expression ProfilingAnimalsMammalsMiceOocytesRNA, MessengerRNA, Messenger3′ UTR motifCP: Developmental biologyCP: Molecular biologydeadenylationdevelopmentmRNA stabilityoocyte-to-embryo transitionpolyadenylationpost-transcriptional regulationtranslation

Identifiers

PMID38306272
PMCPMC11034814
OpenAlexW4391430267

What Socratic holds

Textmetadata
LicenceCC BY-NC-ND
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the Socratic graph.