Evidence map›Paper›PMID 38306419›Full record

ArticleScience advances2024

Microsecond dynamics control the HIV-1 Envelope conformation.

Ashley L Bennett, Robert Edwards, Irina Kosheleva, Carrie Saunders, Yishak Bililign, Ashliegh Williams, Pimthada Bubphamala, Katayoun Manosouri, Kara Anasti, Kevin O Saunders and 4 more

Open access · goldAbstract read
In one paragraph

Article in Science advances, 2024. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 11 papers.

0numbers the graph read from it
0cells of the map it votes in
11citing papers in PubMed
3.2field-weighted citation impact, top 9% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

11 citing papers in PubMed, 12 citations in OpenAlex.

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4 · The record

Corrections and comments

5 · Who and what money

Authors and funding

14 authors at 3 institutions in 1 country.

Ashley L BennettDuke Human Vaccine Institute, Duke University Medical Center, Durham, NC 27710, USA.ORCID 0000-0001-7927-4511
Robert EdwardsDuke Human Vaccine Institute, Duke University Medical Center, Durham, NC 27710, USA.ORCID 0000-0003-4446-1194
Irina KoshelevaBioCARS, Center for Advanced Radiation Sources, The University of Chicago, 9700 South Cass Ave, Bld 434B, Lemont, IL 60439, USA.ORCID 0000-0002-9599-0371
Carrie SaundersDuke Human Vaccine Institute, Duke University Medical Center, Durham, NC 27710, USA.ORCID 0000-0003-1484-0396
Yishak BililignDuke Human Vaccine Institute, Duke University Medical Center, Durham, NC 27710, USA.
Ashliegh WilliamsDuke Human Vaccine Institute, Duke University Medical Center, Durham, NC 27710, USA.ORCID 0009-0009-9212-6834
Pimthada BubphamalaDuke Human Vaccine Institute, Duke University Medical Center, Durham, NC 27710, USA.
Katayoun ManosouriDuke Human Vaccine Institute, Duke University Medical Center, Durham, NC 27710, USA.ORCID 0000-0001-6232-7330
Kara AnastiDuke Human Vaccine Institute, Duke University Medical Center, Durham, NC 27710, USA.ORCID 0000-0002-1854-743X
Kevin O SaundersDuke Human Vaccine Institute, Duke University Medical Center, Durham, NC 27710, USA.ORCID 0000-0001-7399-7954
S Munir AlamDuke Human Vaccine Institute, Duke University Medical Center, Durham, NC 27710, USA.ORCID 0000-0003-0941-0703
Barton F HaynesDuke Human Vaccine Institute, Duke University Medical Center, Durham, NC 27710, USA.ORCID 0000-0002-7643-9023
Priyamvada AcharyaDuke Human Vaccine Institute, Duke University Medical Center, Durham, NC 27710, USA.ORCID 0000-0002-0089-277X
Rory HendersonDuke Human Vaccine Institute, Duke University Medical Center, Durham, NC 27710, USA.ORCID 0000-0002-4301-6382
Duke Medical Center · USDuke University · USUniversity of Chicago · US

Funding

Nonhuman primate studies for development of a prototype HIV vaccine that induces broadly neutralizing antibodiesUM1AI144371 · NIAID · DUKE UNIVERSITY · PI HAYNES, BARTON F. · 2019 to 2025
$190.4M
Virus and Antibody Gene Sequencing CoreP01AI131251 · NIAID · UNIVERSITY OF PENNSYLVANIA · PI Kevin Wiehe · 2017 to 2026
$40.7M
Project 3 - Dynamics of latent HIV-1 reservoirs: High resolution antigenic mapping and strategies to block reboundU54AI170752 · NIAID · DUKE UNIVERSITY · PI Maria Blasi · 2022 to 2026
$32.0M
User Training and OutreachP30GM124169 · NIGMS · UNIVERSITY OF CALIF-LAWRENC BERKELEY LAB · PI PAUL David ADAMS, Gregory L Hura · 2017 to 2026
$28.6M
Ruth L. Kirschstein National Research Service Award (NRSA)- T32T32AI007392 · NIAID · DUKE UNIVERSITY · PI Amy Lynn Corneli, Guido Ferrari · 1990 to 2026
$9.8M
Targeting early metastable intermediates of the SARS-CoV-2 spike for vaccine and therapeutics developmentR01AI145687 · NIAID · DUKE UNIVERSITY · PI Priyamvada Acharya · 2019 to 2026
$6.9M
Electric Field-stimulated Protein MechanicsP41GM118217 · NIGMS · UNIVERSITY OF CHICAGO · PI RANGANATHAN, RAMA · 2019 to 2021
$5.3M
A Pixel Array Detector System for Small Angle X-ray ScatteringS10OD018483 · OD · UNIVERSITY OF CALIF-LAWRENC BERKELEY LAB · PI CLASSEN, SCOTT · 2014 to 2014
$998k
NIAID NIH HHS R01 AI145687NIAID NIH HHS U54 AI170752NIAID NIH HHS UM1 AI144371NIGMS NIH HHS P30 GM124169NIGMS NIH HHS P41 GM118217NIH HHS S10 OD018483
6 · The paper itself

Abstract

The HIV-1 Envelope (Env) glycoprotein facilitates host cell fusion through a complex series of receptor-induced structural changes. Although remarkable progress has been made in understanding the structures of various Env conformations, microsecond timescale dynamics have not been studied experimentally. Here, we used time-resolved, temperature-jump small-angle x-ray scattering to monitor structural rearrangements in an HIV-1 Env SOSIP ectodomain construct with microsecond precision. In two distinct Env variants, we detected a transition that correlated with known Env structure rearrangements with a time constant in the hundreds of microseconds range. A previously unknown structural transition was also observed, which occurred with a time constant below 10 μs, and involved an order-to-disorder transition in the trimer apex. Using this information, we engineered an Env SOSIP construct that locks the trimer in the prefusion closed state by connecting adjacent protomers via disulfides. Our findings show that the microsecond timescale structural dynamics play an essential role in controlling the Env conformation with impacts on vaccine design.

Indexed as

env Gene Products, Human Immunodeficiency VirusHIV-1HIV AntibodiesMolecular ConformationProtein ConformationProtein Multimerizationenv Gene Products, Human Immunodeficiency VirusHIV Antibodies

Identifiers

PMID38306419
PMCPMC10836732
OpenAlexW4391467625

What Socratic holds

Textmetadata
LicenceCC BY-NC
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the Socratic graph.