Evidence map›Paper›PMID 38328045›Full record

ArticlebioRxiv : the preprint server for biology2024

Spatial proteomics of ER tubules reveals CLMN, an ER-actin tether at focal adhesions that promotes cell migration.

Holly Merta, Tadamoto Isogai, Blessy Paul, Gaudenz Danuser, W Mike Henne

Open access · greenAbstract readPreprint
In one paragraph

Article in bioRxiv : the preprint server for biology, 2024. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Not yet cited in PubMed.

0numbers the graph read from it
0cells of the map it votes in
0citing papers in PubMed
–field-weighted citation impact
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

0 citing papers in PubMed, 4 citations in OpenAlex.

No citing paper in PubMed yet.

4 · The record

Corrections and comments

5 · Who and what money

Authors and funding

5 authors at 2 institutions in 1 country.

Holly MertaDepartment of Cell Biology, UT Southwestern Medical Center, Dallas TX 75390.ORCID 0000-0003-4962-3658
Tadamoto IsogaiLyda Hill Department of Bioinformatics and Cecil H. and Ida Green Center for Systems Biology, UT Southwestern Medical Center, Dallas TX 75390.ORCID 0000-0003-0511-0156
Blessy PaulDepartment of Cell Biology, UT Southwestern Medical Center, Dallas TX 75390.ORCID 0000-0002-5118-1919
Gaudenz DanuserDepartment of Cell Biology, UT Southwestern Medical Center, Dallas TX 75390.ORCID 0000-0001-8583-2014
W Mike HenneDepartment of Cell Biology, UT Southwestern Medical Center, Dallas TX 75390.ORCID 0000-0002-2135-2799
Southwestern Medical Center · USThe University of Texas Southwestern Medical Center · US

Funding

UTSW-UNC Center for Cell Signaling AnalysisRM1GM145399 · NIGMS · UT SOUTHWESTERN MEDICAL CENTER · PI Kevin Michael Dean, Klaus M. Hahn · 2022 to 2026
$6.2M
ENDOCRINE &METABOLISM TRAINING GRANTT32DK007307 · NIDDK · UT SOUTHWESTERN MEDICAL CENTER · PI PHILIPP E SCHERER · 1986 to 2026
$5.4M
Spatial determinants in lipid metabolic organization at the sub-organelle levelR35GM119768 · NIGMS · UT SOUTHWESTERN MEDICAL CENTER · PI Mike Henne · 2016 to 2026
$4.1M
Mechanisms of lipid droplet organization and functional diversificationR01DK126887 · NIDDK · UT SOUTHWESTERN MEDICAL CENTER · PI Mike Henne, sarah huen · 2021 to 2026
$2.4M
Spinning Disk Confocal for UT SouthwesternS10OD028630 · OD · UT SOUTHWESTERN MEDICAL CENTER · PI LUBY-PHELPS, KATHERINE J · 2020 to 2020
$600k
NIDDK NIH HHS R01 DK126887NIDDK NIH HHS T32 DK007307NIGMS NIH HHS R35 GM119768NIGMS NIH HHS RM1 GM145399NIH HHS S10 OD028630
6 · The paper itself

Abstract

The endoplasmic reticulum (ER) is structurally and functionally diverse, yet how its functions are organized within morphological subdomains is incompletely understood. Utilizing TurboID-based proximity labeling and CRISPR knock-in technologies, here we map the proteomic landscape of the human ER and nuclear envelope. Spatial proteomics reveals enrichments of proteins into ER tubules, sheets, and nuclear envelope. We uncover an ER-enriched actin-binding protein, Calmin (CLMN), and define it as an ER-actin tether that localizes to focal adhesions adjacent to ER tubules. CLMN depletion perturbs focal adhesion disassembly, actin dynamics, and cell movement. Mechanistically, CLMN-depleted cells also exhibit defects in calcium signaling near ER-actin interfaces, suggesting CLMN promotes calcium signaling near adhesions to facilitate their disassembly. Collectively, we map the sub-organelle proteome landscape of the ER, identify CLMN as an ER-actin tether, and describe a non-canonical mechanism by which ER tubules engage actin to regulate cell migration.

Indexed as

Calmincellular adhesionCLMNendoplasmic reticulum (ER)migrationTurboID

Identifiers

PMID38328045
PMCPMC10849733
OpenAlexW4391253073

What Socratic holds

Textmetadata
LicenceCC BY-NC-ND
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the Socratic graph.