Evidence map›Paper›PMID 38331736›Full record

ArticleBMC genomics2024

Integrated analysis of microRNA and messenger RNA expression profiles reveals functional microRNA in infectious bovine rhinotracheitis virus-induced mitochondrial damage in Madin-Darby bovine kidney cells.

Yingcai Ma, Xueping Guo, Qin He, Lu Liu, Zelong Li, Xiaomin Zhao, Wenxi Gu, Qi Zhong, Na Li, Gang Yao and 1 more

Open access · goldAbstract read
In one paragraph

Article in BMC genomics, 2024. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 3 papers.

0numbers the graph read from it
0cells of the map it votes in
3citing papers in PubMed
2.0field-weighted citation impact, top 14% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

3 citing papers in PubMed, 7 citations in OpenAlex.

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4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

11 authors at 3 institutions in 1 country.

Yingcai Ma *College of Veterinary Medicine, Xinjiang Agricultural University, Urumqi, 830052, China.
Xueping Guo *College of Veterinary Medicine, Xinjiang Agricultural University, Urumqi, 830052, China.
Qin HeCollege of Veterinary Medicine, Xinjiang Agricultural University, Urumqi, 830052, China.
Lu LiuCollege of Veterinary Medicine, Xinjiang Agricultural University, Urumqi, 830052, China.
Zelong LiCollege of Veterinary Medicine, Xinjiang Agricultural University, Urumqi, 830052, China.
Xiaomin ZhaoCollege of Veterinary Medicine, Northwest A & F University, Yangling, 712100, China.
Wenxi GuInstitute of Animal Science, Xinjiang Academy of Animal Sciences, Urumqi, 830011, China.
Qi ZhongInstitute of Animal Science, Xinjiang Academy of Animal Sciences, Urumqi, 830011, China.
Na LiCollege of Veterinary Medicine, Xinjiang Agricultural University, Urumqi, 830052, China.
Gang YaoCollege of Veterinary Medicine, Xinjiang Agricultural University, Urumqi, 830052, China. yaogang516@163.com.
Xuelian MaCollege of Veterinary Medicine, Xinjiang Agricultural University, Urumqi, 830052, China. maxuelian@xjau.edu.cn.
Xinjiang Agricultural University · CNXinjiang Academy of Animal Science · CNNorthwest A&F University · CN

Funding

Autonomous Region Innovation Team Project 2023D14018National Natural Science Foundation of China 32002251Xinjiang Uygur Autonomous Region Nature Fund Project 2021D01A75
6 · The paper itself

Abstract

backgroundStudies have confirmed that Infectious bovine rhinotracheitis virus (IBRV) infection induces mitochondrial damage. MicroRNAs (miRNAs) are a class of noncoding RNA molecules, which are involved in various biological processes and pathological changes associated with mitochondrial damage. It is currently unclear whether miRNAs participate in IBRV-induced mitochondrial damage in Madin-Darby bovine kidney (MDBK) cells.

resultsIn the present study, we used high-throughput sequencing technology, Gene Ontology (GO) and Kyoto Encyclopedia of Genes and Genomes (KEGG) enrichment analysis to screen for mitochondria-related miRNAs and messenger RNAs (mRNAs). In total, 279 differentially expressed miRNAs and 832 differentially expressed mRNAs were identified in 6 hours (IBRV1) versus 24 hours (IBRV2) after IBRV infection in MDBK cells. GO and KEGG enrichment analysis revealed that 42 differentially expressed mRNAs and 348 target genes of differentially expressed miRNAs were correlated with mitochondrial damage, and the miRNA-mitochondria-related target genes regulatory network was constructed to elucidate their potential regulatory relationships. Among the 10 differentially expressed miRNAs, 8 showed expression patterns consistent with the high-throughput sequencing results. Functional validation results showed that overexpression of miR-10a and miR-182 aggravated mitochondrial damage, while inhibition of miR-10a and miR-182 alleviated mitochondrial damage.

conclusionsThis study not only revealed the expression changes of miRNAs and mRNAs in IBRV-infected MDBK cells, but also revealed possible biological regulatory relationship between them. MiR-10a and miR-182 may have the potential to be developed as biomarkers for the diagnosis and treatment of IBRV. Together, Together, these data and analyses provide additional insights into the roles of miRNA and mRNA in IBRV-induced mitochondria damage.

Indexed as

Herpesvirus 1, BovineMicroRNAsAnimalsCattleEpithelial CellsGene Expression ProfilingGene Regulatory NetworksKidneyRNA, MessengerMicroRNAsRNA, MessengerInfectious bovine rhinotracheitis virus (IBRV)MicroRNA (miRNA)miR-10amiR-182Mitochondrial damage

Identifiers

PMID38331736
PMCPMC10851472
OpenAlexW4391646833

What Socratic holds

Textmetadata
LicenceCC BY
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the Socratic graph.