Evidence map›Paper›PMID 38343827›Full record

ArticlemedRxiv : the preprint server for health sciences2024

BRSET: A Brazilian Multilabel Ophthalmological Dataset of Retina Fundus Photos.

Luis Filipe Nakayama, David Restrepo, João Matos, Lucas Zago Ribeiro, Fernando Korn Malerbi, Leo Anthony Celi, Caio Saito Regatieri

Open access · greenAbstract readPreprint
In one paragraph

Article in medRxiv : the preprint server for health sciences, 2024. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Not yet cited in PubMed.

0numbers the graph read from it
0cells of the map it votes in
0citing papers in PubMed
–field-weighted citation impact
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

0 citing papers in PubMed, 19 citations in OpenAlex.

No citing paper in PubMed yet.

4 · The record

Corrections and comments

5 · Who and what money

Authors and funding

7 authors at 5 institutions in 4 countries.

Luis Filipe NakayamaDepartment of Ophthalmology, São Paulo Federal University, São Paulo, São Paulo, Brazil.ORCID 0000-0002-6847-6748
David RestrepoLaboratory for Computational Physiology, Massachusetts Institute of Technology, Cambridge, Massachusetts, United States of America.
João MatosLaboratory for Computational Physiology, Massachusetts Institute of Technology, Cambridge, Massachusetts, United States of America.ORCID 0000-0002-0312-1647
Lucas Zago RibeiroDepartment of Ophthalmology, São Paulo Federal University, São Paulo, São Paulo, Brazil.
Fernando Korn MalerbiDepartment of Ophthalmology, São Paulo Federal University, São Paulo, São Paulo, Brazil.
Leo Anthony CeliLaboratory for Computational Physiology, Massachusetts Institute of Technology, Cambridge, Massachusetts, United States of America.
Caio Saito RegatieriDepartment of Ophthalmology, São Paulo Federal University, São Paulo, São Paulo, Brazil.
Universidade Federal de São Paulo · BRBeth Israel Deaconess Medical Center · USMassachusetts Institute of Technology · USUniversidade do Porto · PTUniversity of Cauca · CO

Funding

Bridge2AI: Patient-Focused Collaborative Hospital Repository Uniting Standards (CHoRUS) for Equitable AIOT2OD032701 · OD · MASSACHUSETTS GENERAL HOSPITAL · PI BIHORAC, AZRA, CLERMONT, GILLES · 2022 to 2025
$24.6M
MUST Data Science Research Hub (MUDSReH) - Democratized Trusted Research Environment (dTRE)U54TW012043 · FIC · MBARARA UNIVERSITY/SCIENCE/ TECHNOLOGY · PI Leo Anthony G Celi, Jessica Elizabeth Haberer · 2021 to 2026
$6.9M
Critical Care Informatics: Ethical considerations around the use and sharing of health-related dataR01EB017205 · NIBIB · MASSACHUSETTS INSTITUTE OF TECHNOLOGY · PI CELI, LEO ANTHONY G, MARK, ROGER GREENWOOD · 2014 to 2021
$3.8M
FIC NIH HHS U54 TW012043NIBIB NIH HHS R01 EB017205NIH HHS OT2 OD032701
6 · The paper itself

Abstract

Introduction: The Brazilian Multilabel Ophthalmological Dataset (BRSET) addresses the scarcity of publicly available ophthalmological datasets in Latin America. BRSET comprises 16,266 color fundus retinal photos from 8,524 Brazilian patients, aiming to enhance data representativeness, serving as a research and teaching tool. It contains sociodemographic information, enabling investigations into differential model performance across demographic groups. Methods: Data from three São Paulo outpatient centers yielded demographic and medical information from electronic records, including nationality, age, sex, clinical history, insulin use, and duration of diabetes diagnosis. A retinal specialist labeled images for anatomical features (optic disc, blood vessels, macula), quality control (focus, illumination, image field, artifacts), and pathologies (e.g., diabetic retinopathy). Diabetic retinopathy was graded using International Clinic Diabetic Retinopathy and Scottish Diabetic Retinopathy Grading. Validation used Dino V2 Base for feature extraction, with 70% training and 30% testing subsets. Support Vector Machines (SVM) and Logistic Regression (LR) were employed with weighted training. Performance metrics included area under the receiver operating curve (AUC) and Macro F1-score. Results: BRSET comprises 65.1% Canon CR2 and 34.9% Nikon NF5050 images. 61.8% of the patients are female, and the average age is 57.6 years. Diabetic retinopathy affected 15.8% of patients, across a spectrum of disease severity. Anatomically, 20.2% showed abnormal optic discs, 4.9% abnormal blood vessels, and 28.8% abnormal macula. Models were trained on BRSET in three prediction tasks: "diabetes diagnosis"; "sex classification"; and "diabetic retinopathy diagnosis". Discussion: BRSET is the first multilabel ophthalmological dataset in Brazil and Latin America. It provides an opportunity for investigating model biases by evaluating performance across demographic groups. The model performance of three prediction tasks demonstrates the value of the dataset for external validation and for teaching medical computer vision to learners in Latin America using locally relevant data sources.

Indexed as

artificial intelligencedatasetsfreely available dataOphthalmologyretina

Identifiers

PMID38343827
PMCPMC10854338
OpenAlexW4391171934

What Socratic holds

Textmetadata
LicenceCC BY
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the Socratic graph.