Evidence map›Paper›PMID 38360785›Full record

ArticleAJNR. American journal of neuroradiology2024

Automated Detection of Cervical Spinal Stenosis and Cord Compression via Vision Transformer and Rules-Based Classification.

David L Payne, Xuan Xu, Farshid Faraji, Kevin John, Katherine Ferra Pradas, Vahni Vishala Bernard, Lev Bangiyev, Prateek Prasanna

Open access · hybridAbstract read
In one paragraph

Article in AJNR. American journal of neuroradiology, 2024. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 5 papers, 2 of them syntheses that pooled it.

0numbers the graph read from it
0cells of the map it votes in
5citing papers in PubMed, 2 pooled it
6.3field-weighted citation impact, top 3% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

5 citing papers in PubMed, 2 syntheses or guidelines pooled it, 11 citations in OpenAlex.

  1. Pooled it
  2. Pooled it
  3. Review
  4. Review
  5. Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

8 authors at 2 institutions in 1 country.

David L PayneFrom the Department of Radiology (D.L.P., F.F., K.J., K.F.P., V.V.B., L.B.), Stony Brook University Hospital, Stony Brook, New York David.payne@stonybrookmedicine.edu.ORCID https://orcid.org/0000-0002-6316-7911
Xuan XuDepartment of Biomedical Informatics (D.L.P., X.X., F.F., K.J., P.P.), Stony Brook University, Stony Brook, New York.
Farshid FarajiFrom the Department of Radiology (D.L.P., F.F., K.J., K.F.P., V.V.B., L.B.), Stony Brook University Hospital, Stony Brook, New York.ORCID https://orcid.org/0000-0003-3218-1347
Kevin JohnFrom the Department of Radiology (D.L.P., F.F., K.J., K.F.P., V.V.B., L.B.), Stony Brook University Hospital, Stony Brook, New York.ORCID https://orcid.org/0000-0002-2299-0434
Katherine Ferra PradasFrom the Department of Radiology (D.L.P., F.F., K.J., K.F.P., V.V.B., L.B.), Stony Brook University Hospital, Stony Brook, New York.
Vahni Vishala BernardFrom the Department of Radiology (D.L.P., F.F., K.J., K.F.P., V.V.B., L.B.), Stony Brook University Hospital, Stony Brook, New York.
Lev BangiyevFrom the Department of Radiology (D.L.P., F.F., K.J., K.F.P., V.V.B., L.B.), Stony Brook University Hospital, Stony Brook, New York.ORCID https://orcid.org/0000-0001-6257-0314
Prateek PrasannaDepartment of Biomedical Informatics (D.L.P., X.X., F.F., K.J., P.P.), Stony Brook University, Stony Brook, New York.ORCID https://orcid.org/0000-0002-3068-3573
Stony Brook University Hospital · USStony Brook University · US

Funding

IMAT-ITCR Collaboration: Combining FIBI and topological data analysis: Synergistic approaches for tumor structural microenvironment explorationR21CA258493 · NCI · STATE UNIVERSITY NEW YORK STONY BROOK · PI CHEN, CHAO, PRASANNA, PRATEEK · 2022 to 2023
$467k
NCI NIH HHS R21 CA258493
6 · The paper itself

Abstract

background and purposeCervical spinal cord compression, defined as spinal cord deformity and severe narrowing of the spinal canal in the cervical region, can lead to severe clinical consequences, including intractable pain, sensory disturbance, paralysis, and even death, and may require emergent intervention to prevent negative outcomes. Despite the critical nature of cord compression, no automated tool is available to alert clinical radiologists to the presence of such findings. This study aims to demonstrate the ability of a vision transformer (ViT) model for the accurate detection of cervical cord compression. MATERIALS AND

methodsA clinically diverse cohort of 142 cervical spine MRIs was identified, 34% of which were normal or had mild stenosis, 31% with moderate stenosis, and 35% with cord compression. Utilizing gradient-echo images, slices were labeled as no cord compression/mild stenosis, moderate stenosis, or severe stenosis/cord compression. Segmentation of the spinal canal was performed and confirmed by neuroradiology faculty. A pretrained ViT model was fine-tuned to predict section-level severity by using a train:validation:test split of 60:20:20. Each examination was assigned an overall severity based on the highest level of section severity, with an examination labeled as positive for cord compression if ≥1 section was predicted in the severe category. Additionally, 2 convolutional neural network (CNN) models (ResNet50, DenseNet121) were tested in the same manner.

resultsThe ViT model outperformed both CNN models at the section level, achieving section-level accuracy of 82%, compared with 72% and 78% for ResNet and DenseNet121, respectively. ViT patient-level classification achieved accuracy of 93%, sensitivity of 0.90, positive predictive value of 0.90, specificity of 0.95, and negative predictive value of 0.95. Receiver operating characteristic area under the curve was greater for ViT than either CNN.

conclusionsThis classification approach using a ViT model and rules-based classification accurately detects the presence of cervical spinal cord compression at the patient level. In this study, the ViT model outperformed both conventional CNN approaches at the section and patient levels. If implemented into the clinical setting, such a tool may streamline neuroradiology workflow, improving efficiency and consistency.

Identifiers

PMID38360785
PMCPMC11288556
OpenAlexW4391836338

What Socratic holds

Textmetadata
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the Socratic graph.