Evidence map›Paper›PMID 38360993›Full record

ArticleThe EMBO journal2024

Shared and distinct mechanisms of UBA1 inactivation across different diseases.

Jason C Collins, Samuel J Magaziner, Maya English, Bakar Hassan, Xiang Chen, Nicholas Balanda, Meghan Anderson, Athena Lam, Sebastian Fernandez-Pol, Bernice Kwong and 9 more

Open access · diamondAbstract read
In one paragraph

Article in The EMBO journal, 2024. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 34 papers, 1 of them a synthesis that pooled it.

0numbers the graph read from it
0cells of the map it votes in
34citing papers in PubMed, 1 pooled it
17.4field-weighted citation impact, top 1% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

34 citing papers in PubMed, 1 synthesis or guideline pooled it, 37 citations in OpenAlex.

  1. Guideline
  2. Myelodysplasia in VEXAS syndrome.Blood advances · 2026
    Review
  3. SomaticBlood neoplasia · 2026
    Article
  4. Article
  5. Article
  6. Cell autonomous inflammation in VEXAS is mediated by cGAS-STING.bioRxiv : the preprint server for biology · 2026
    Article
  7. VEXAS syndrome.Nature reviews. Disease primers · 2026
    Review
  8. Article
  9. Article
  10. Article
  11. Article
  12. Review
  13. Article
  14. Article
  15. Review
  16. Article
  17. Article
  18. Review
  19. Expert Perspective: Hematologic Malignancies and Vasculitis.Arthritis & rheumatology (Hoboken, N.J.) · 2025
    Review
  20. Article
4 · The record

Corrections and comments

5 · Who and what money

Authors and funding

19 authors at 5 institutions in 2 countries.

Jason C CollinsStem Cell Biochemistry Section, National Institute of Dental and Craniofacial Research, National institutes of Health, Bethesda, MD, USA.ORCID http://orcid.org/0000-0002-7653-0070
Samuel J MagazinerCenter for Human Genetics and Genomics, New York University School of Medicine, New York, NY, USA.
Maya EnglishStem Cell Biochemistry Section, National Institute of Dental and Craniofacial Research, National institutes of Health, Bethesda, MD, USA.ORCID http://orcid.org/0000-0002-0267-3677
Bakar HassanProtein Processing Section, Center for Structural Biology, National Cancer Institute, National Institutes of Health, Frederick, MD, USA.
Xiang ChenProtein Processing Section, Center for Structural Biology, National Cancer Institute, National Institutes of Health, Frederick, MD, USA.
Nicholas BalandaCenter for Human Genetics and Genomics, New York University School of Medicine, New York, NY, USA.ORCID http://orcid.org/0000-0002-8466-5944
Meghan AndersonCenter for Human Genetics and Genomics, New York University School of Medicine, New York, NY, USA.
Athena LamCenter for Human Genetics and Genomics, New York University School of Medicine, New York, NY, USA.
Sebastian Fernandez-PolDepartment of Pathology, Stanford University Medical School, Stanford, CA, USA.ORCID http://orcid.org/0000-0002-0428-0199
Bernice KwongDepartment of Dermatology, Stanford University Cancer Center, Stanford, CA, USA.
Peter L GreenbergDivision of Hematology, Stanford University Cancer Center, Stanford, CA, USA.
Benjamin TerrierDepartment of Internal Medicine, Hôpital Cochin, Assistance Publique-Hôpitaux de Paris, Paris, France.
Mary E LikhiteCenter for Human Genetics and Genomics, New York University School of Medicine, New York, NY, USA.
Olivier KosmiderLaboratory of Hematology, Hôpital Cochin, Assistance Publique-Hôpitaux de Paris, Paris, France.
Yan WangMass Spectrometry Facility, National Institute of Dental and Craniofacial Research, National Institutes of Health, Bethesda, MD, USA.ORCID http://orcid.org/0000-0003-1187-9527
Nadine L SamaraStructural Biochemistry Unit, National Institute of Dental and Craniofacial Research, National Institutes of Health, Bethesda, MD, USA.ORCID http://orcid.org/0000-0001-7152-2939
Kylie J WaltersProtein Processing Section, Center for Structural Biology, National Cancer Institute, National Institutes of Health, Frederick, MD, USA.ORCID http://orcid.org/0000-0001-7590-2891
David B Beck *Center for Human Genetics and Genomics, New York University School of Medicine, New York, NY, USA.
Achim Werner *Stem Cell Biochemistry Section, National Institute of Dental and Craniofacial Research, National institutes of Health, Bethesda, MD, USA. achim.werner@nih.gov.ORCID http://orcid.org/0000-0003-1051-8447
Center for Human Genetics · USNational Institutes of Health · USNational Institute of Dental and Craniofacial Research · USStanford University · USHôpital Cochin · FR

Funding

Ubiquitin signaling for protein degradationZIABC011490 · NCI · DIVISION OF BASIC SCIENCES - NCI · PI WALTERS, KYLIE · 2013 to 2025
$21.1M
Ubiquitin-dependent cell-fate decisions during human development and diseaseZIADE000749 · NIDCR · NATIONAL INSTITUTE OF DENTAL & CRANIOFACIAL RESEARCH · PI WERNER, ACHIM · 2018 to 2025
$14.1M
Gene Transfer Core, NIDCR-DIRZICDE000744 · NIDCR · NATIONAL INSTITUTE OF DENTAL & CRANIOFACIAL RESEARCH · PI KULKARNI, ASHOK · 2014 to 2023
$12.1M
Mass Spectrometry FacilityZICDE000751 · NIDCR · NATIONAL INSTITUTE OF DENTAL & CRANIOFACIAL RESEARCH · PI WANG, YAN · 2020 to 2025
$3.6M
Understanding the Role of Somatic Mutations in Adult Inflammatory DiseasesR00AR078205 · NIAMS · NEW YORK UNIVERSITY SCHOOL OF MEDICINE · PI BECK, DAVID · 2022 to 2024
$740k
HHS | NIH | National Institute of Arthritis and Musculoskeletal and Skin Diseases (NIAMS) R00AR078205Intramural NIH HHS ZIA BC011490Intramural NIH HHS ZIA DE000749Intramural NIH HHS ZIC DE000744NIAMS NIH HHS R00 AR078205U.S. Department of Defense (DOD) BMFRP- IDA HT9425-23-1-0507
6 · The paper itself

Abstract

Most cellular ubiquitin signaling is initiated by UBA1, which activates and transfers ubiquitin to tens of E2 enzymes. Clonally acquired UBA1 missense mutations cause an inflammatory-hematologic overlap disease called VEXAS (vacuoles, E1, X-linked, autoinflammatory, somatic) syndrome. Despite extensive clinical investigation into this lethal disease, little is known about the underlying molecular mechanisms. Here, by dissecting VEXAS-causing UBA1 mutations, we discovered that p.Met41 mutations alter cytoplasmic isoform expression, whereas other mutations reduce catalytic activity of nuclear and cytoplasmic isoforms by diverse mechanisms, including aberrant oxyester formation. Strikingly, non-p.Met41 mutations most prominently affect transthioesterification, revealing ubiquitin transfer to cytoplasmic E2 enzymes as a shared property of pathogenesis amongst different VEXAS syndrome genotypes. A similar E2 charging bottleneck exists in some lung cancer-associated UBA1 mutations, but not in spinal muscular atrophy-causing UBA1 mutations, which instead, render UBA1 thermolabile. Collectively, our results highlight the precision of conformational changes required for faithful ubiquitin transfer, define distinct and shared mechanisms of UBA1 inactivation in diverse diseases, and suggest that specific E1-E2 modules control different aspects of tissue differentiation and maintenance.

Indexed as

Ubiquitin-Activating EnzymesHumansLung NeoplasmsMutation, MissenseUbiquitinUBA1 protein, humanUbiquitinUbiquitin-Activating EnzymesLung Cancer in Never Smokers (LCINS)Spinal Muscular Atrophy (SMA)UBA1UbiquitinVEXAS Syndrome

Identifiers

PMID38360993
PMCPMC11099125
OpenAlexW4391845553

What Socratic holds

Textmetadata
LicenceCC BY
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the Socratic graph.