Evidence map›Paper›PMID 38365933›Full record

ArticleCommunications biology2024

SARS-CoV-2 rapidly evolves lineage-specific phenotypic differences when passaged repeatedly in immune-naïve mice.

Julian Daniel Sunday Willett, Annie Gravel, Isabelle Dubuc, Leslie Gudimard, Ana Claudia Dos Santos Pereira Andrade, Émile Lacasse, Paul Fortin, Ju-Ling Liu, Jose Avila Cervantes, Jose Hector Galvez and 7 more

Open access · goldAbstract read
In one paragraph

Article in Communications biology, 2024. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 9 papers.

0numbers the graph read from it
0cells of the map it votes in
9citing papers in PubMed
4.7field-weighted citation impact, top 5% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

9 citing papers in PubMed, 12 citations in OpenAlex.

  1. Article
  2. Constrained Diffusion as a Paradigm for Evolution.bioRxiv : the preprint server for biology · 2026
    Article
  3. Article
  4. Article
  5. SARS-CoV-2 mutant spectrum complexity is an epidemiologically evolvable trait.Proceedings of the National Academy of Sciences of the United States of America · 2025
    Article
  6. Article
  7. Article
  8. Review
  9. Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

17 authors at 4 institutions in 1 country.

Julian Daniel Sunday WillettQuantitative Life Sciences Ph.D. Program, McGill University, Montreal, QC, Canada.ORCID 0000-0002-8103-0329
Annie GravelAxe maladies infectieuses et immunitaires, Centre de Recherche du Centre Hospitalier Universitaire de Québec- Université Laval, Québec, Canada.
Isabelle DubucAxe maladies infectieuses et immunitaires, Centre de Recherche du Centre Hospitalier Universitaire de Québec- Université Laval, Québec, Canada.
Leslie GudimardAxe maladies infectieuses et immunitaires, Centre de Recherche du Centre Hospitalier Universitaire de Québec- Université Laval, Québec, Canada.
Ana Claudia Dos Santos Pereira AndradeAxe maladies infectieuses et immunitaires, Centre de Recherche du Centre Hospitalier Universitaire de Québec- Université Laval, Québec, Canada.
Émile LacasseAxe maladies infectieuses et immunitaires, Centre de Recherche du Centre Hospitalier Universitaire de Québec- Université Laval, Québec, Canada.ORCID 0000-0002-3669-5292
Paul FortinAxe maladies infectieuses et immunitaires, Centre de Recherche du Centre Hospitalier Universitaire de Québec- Université Laval, Québec, Canada.ORCID 0000-0002-7278-2596
Ju-Ling LiuMcGill Genome Centre, McGill University, Montreal, QC, Canada.
Jose Avila CervantesMcGill Genome Centre, McGill University, Montreal, QC, Canada.ORCID 0000-0001-9808-9733
Jose Hector GalvezCanadian Centre for Computational Genomics, McGill University, Montreal, QC, Canada.ORCID 0000-0001-9748-2074
Haig Hugo Vrej DjambazianMcGill Genome Centre, McGill University, Montreal, QC, Canada.ORCID 0000-0003-0222-4182
Melissa ZwaigMcGill Genome Centre, McGill University, Montreal, QC, Canada.
Anne-Marie RoyMcGill Genome Centre, McGill University, Montreal, QC, Canada.
Sally LeeMcGill Genome Centre, McGill University, Montreal, QC, Canada.
Shu-Huang ChenMcGill Genome Centre, McGill University, Montreal, QC, Canada.
Jiannis RagoussisMcGill Genome Centre, McGill University, Montreal, QC, Canada. ioannis.ragoussis@mcgill.ca.ORCID 0000-0002-8515-0934
Louis FlamandAxe maladies infectieuses et immunitaires, Centre de Recherche du Centre Hospitalier Universitaire de Québec- Université Laval, Québec, Canada. louis.flamand@crchudequebec.ulaval.ca.ORCID 0000-0001-5010-4586
McGill Genome Centre · CACentre hospitalier universitaire de Québec · CAJewish General Hospital · CAMcGill University · CA

Funding

Gouvernement du Canada | Canadian Institutes of Health Research (Instituts de Recherche en Santé du Canada) CIHR 476575
6 · The paper itself

Abstract

The persistence of SARS-CoV-2 despite the development of vaccines and a degree of herd immunity is partly due to viral evolution reducing vaccine and treatment efficacy. Serial infections of wild-type (WT) SARS-CoV-2 in Balb/c mice yield mouse-adapted strains with greater infectivity and mortality. We investigate if passaging unmodified B.1.351 (Beta) and B.1.617.2 (Delta) 20 times in K18-ACE2 mice, expressing the human ACE2 receptor, in a BSL-3 laboratory without selective pressures, drives human health-relevant evolution and if evolution is lineage-dependent. Late-passage virus causes more severe disease, at organism and lung tissue scales, with late-passage Delta demonstrating antibody resistance and interferon suppression. This resistance co-occurs with a de novo spike S371F mutation, linked with both traits. S371F, an Omicron-characteristic mutation, is co-inherited at times with spike E1182G per Nanopore sequencing, existing in different within-sample viral variants at others. Both S371F and E1182G are linked to mammalian GOLGA7 and ZDHHC5 interactions, which mediate viral-cell entry and antiviral response. This study demonstrates SARS-CoV-2's tendency to evolve with phenotypic consequences, its evolution varying by lineage, and suggests non-dominant quasi-species contribution.

Indexed as

Angiotensin-Converting Enzyme 2COVID-19AnimalsHumansMammalsMiceMice, Inbred BALB CSARS-CoV-2Angiotensin-Converting Enzyme 2

Identifiers

PMID38365933
PMCPMC10873417
OpenAlexW4391883848

What Socratic holds

Textmetadata
LicenceCC BY
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the Socratic graph.