Evidence map›Paper›PMID 38376071›Full record

ArticleMicrobial biotechnology2024

Genome-wide analysis of bZIP gene family members in Pleurotus ostreatus, and potential roles of PobZIP3 in development and the heat stress response.

Yuanyuan Zhou, Zihao Li, Congtao Xu, Jinlong Pan, Haikang Li, Yi Zhou, Yajie Zou

Abstract read
In one paragraph

Article in Microbial biotechnology, 2024. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 10 papers.

0numbers the graph read from it
0cells of the map it votes in
10citing papers in PubMed
–field-weighted citation impact
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

10 citing papers in PubMed.

  1. Article
  2. Article
  3. Review
  4. Article
  5. Article
  6. Article
  7. Food chemistry. Molecular sciences · 2025
    Article
  8. Article
  9. Article
  10. Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

7 authors.

Yuanyuan ZhouState Key Laboratory of Efficient Utilization of Arid and Semi-arid ArableLand in Northern China, Beijing, China.
Zihao LiState Key Laboratory of Efficient Utilization of Arid and Semi-arid ArableLand in Northern China, Beijing, China.
Congtao XuState Key Laboratory of Efficient Utilization of Arid and Semi-arid ArableLand in Northern China, Beijing, China.
Jinlong PanState Key Laboratory of Efficient Utilization of Arid and Semi-arid ArableLand in Northern China, Beijing, China.
Haikang LiState Key Laboratory of Efficient Utilization of Arid and Semi-arid ArableLand in Northern China, Beijing, China.
Yi ZhouState Key Laboratory of Efficient Utilization of Arid and Semi-arid ArableLand in Northern China, Beijing, China.
Yajie ZouState Key Laboratory of Efficient Utilization of Arid and Semi-arid ArableLand in Northern China, Beijing, China.ORCID 0009-0006-1426-1588

Funding

National Natural Science Foundation of China 32272788
6 · The paper itself

Abstract

The basic leucine zipper (bZIP) transcription factor (TF) is widespread among eukaryotes and serves different roles in fungal processes including nutrient utilization, growth, stress responses and development. The oyster mushroom (Pleurotus ostreatus) is an important and widely cultivated edible mushroom worldwide; nevertheless, reports are lacking on the identification or function of bZIP gene family members in P. ostreatus. Herein, 11 bZIPs on 6 P. ostreatus chromosomes were systematically identified, which were classified into 3 types according to their protein sequences. Phylogenetic analysis of PobZIPs with other fungal bZIPs indicated that PobZIPs may have differentiated late. Cis-regulatory element analysis revealed that at least one type of stress-response-related element was present on each bZIP promoter. RNA-seq and RT-qPCR analyses revealed that bZIP expression patterns were altered under heat stress and different developmental stages. We combined results from GST-Pull-down, EMSA and yeast two-hybrid assays to screen a key heat stress-responsive candidate gene PobZIP3. PobZIP3 overexpression in P. ostreatus enhanced tolerance to high temperature and cultivation assays revealed that PobZIP3 positively regulates the development of P. ostreatus. RNA-seq analysis showed that PobZIP3 plays a role in glucose metabolism pathways, antioxidant enzyme activity and sexual reproduction. These results may support future functional studies of oyster mushroom bZIP TFs.

Indexed as

PleurotusAmino Acid SequenceBasic-Leucine Zipper Transcription FactorsHeat-Shock ResponsePhylogenyBasic-Leucine Zipper Transcription Factors

Identifiers

PMID38376071
PMCPMC10877997

What Socratic holds

Textmetadata
LicenceCC BY
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Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the Socratic graph.