Evidence map›Paper›PMID 38397222›Full record

ArticleGenes2024

Genome-Wide Detection for Runs of Homozygosity in Baoshan Pigs Using Whole Genome Resequencing.

Wenjun Li, Xudong Wu, Decai Xiang, Wei Zhang, Lingxiang Wu, Xintong Meng, Jinlong Huo, Zongjun Yin, Guowen Fu, Guiying Zhao

Open access · goldAbstract read
In one paragraph

Article in Genes, 2024. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 3 papers.

0numbers the graph read from it
0cells of the map it votes in
3citing papers in PubMed
1.7field-weighted citation impact, top 17% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

3 citing papers in PubMed, 3 citations in OpenAlex.

  1. Article
  2. Article
  3. Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

10 authors at 4 institutions in 1 country.

Wenjun LiCollege of Animal Science and Technology, Yunnan Agricultural University, Kunming 650201, China.
Xudong WuInstitute of Animal Husbandry and Veterinary Medicine, Anhui Academy of Agricultural Sciences, Hefei 230036, China.
Decai XiangInstitute of Pig and Animal Research, Yunnan Academy of Animal Husbandry and Veterinary Science, Kunming 650201, China.
Wei ZhangInstitute of Animal Husbandry and Veterinary Medicine, Anhui Academy of Agricultural Sciences, Hefei 230036, China.
Lingxiang WuCollege of Animal Science and Technology, Yunnan Agricultural University, Kunming 650201, China.
Xintong MengCollege of Animal Science and Technology, Yunnan Agricultural University, Kunming 650201, China.
Jinlong HuoCollege of Animal Science and Technology, Yunnan Agricultural University, Kunming 650201, China.ORCID 0000-0002-6350-6784
Zongjun YinCollege of Animal Science and Technology, Anhui Agricultural University, Hefei 230036, China.
Guowen FuCollege of Animal Science and Technology, Yunnan Agricultural University, Kunming 650201, China.
Guiying ZhaoCollege of Animal Science and Technology, Yunnan Agricultural University, Kunming 650201, China.
Yunnan Agricultural University · CNAnimal Science Research Institute · CNAnhui Agricultural University · CNYunnan Animal Science and Veterinary Institute · CN

Funding

the Key Research and Development Project of Yunnan Province 2018BB003the Major Special Science and Technology Project of Yunnan Province 202302AE090016
6 · The paper itself

Abstract

Baoshan pigs (BS) are a local breed in Yunnan Province that may face inbreeding owing to its limited population size. To accurately evaluate the inbreeding level of the BS pig population, we used whole-genome resequencing to identify runs of homozygosity (ROH) regions in BS pigs, calculated the inbreeding coefficient based on pedigree and ROH, and screened candidate genes with important economic traits from ROH islands. A total of 22,633,391 SNPS were obtained from the whole genome of BS pigs, and 201 ROHs were detected from 532,450 SNPS after quality control. The number of medium-length ROH (1-5 Mb) was the highest (98.43%), the number of long ROH (>5 Mb) was the lowest (1.57%), and the inbreeding of BS pigs mainly occurred in distant generations. The inbreeding coefficient

Indexed as

InbreedingPolymorphism, Single NucleotideAnimalsChinaDiarrheaHomozygoteQuantitative Trait LociSwinecandidate geneinbreeding coefficientlocal breedruns of homozygositywhole genome resequencing

Identifiers

PMID38397222
PMCPMC10887577
OpenAlexW4391744149

What Socratic holds

Textmetadata
LicenceCC BY
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the Socratic graph.