Evidence map›Paper›PMID 38402320›Full record

ArticleScientific reports2024

Novel antimicrobial peptides against Cutibacterium acnes designed by deep learning.

Qichang Dong, Shaohua Wang, Ying Miao, Heng Luo, Zuquan Weng, Lun Yu

Open access · goldAbstract read
In one paragraph

Article in Scientific reports, 2024. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 11 papers.

0numbers the graph read from it
0cells of the map it votes in
11citing papers in PubMed
4.8field-weighted citation impact, top 5% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

11 citing papers in PubMed, 14 citations in OpenAlex.

  1. Article
  2. Review
  3. Review
  4. Article
  5. Review
  6. Article
  7. Article
  8. Review
  9. Changes in the Microbiome During Chronic Rhinosinusitis.Pathogens (Basel, Switzerland) · 2024
    Review
  10. Review
  11. Recent Applications of Artificial Intelligence in Discovery of New Antibacterial Agents.Advances and applications in bioinformatics and chemistry : AABC · 2024
    Review
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

6 authors at 2 institutions in 1 country.

Qichang Dong *Shanghai MetaNovas Biotech Co., Ltd, Shanghai, 200120, China.
Shaohua Wang *Shanghai MetaNovas Biotech Co., Ltd, Shanghai, 200120, China.
Ying Miao *College of Biological Science and Engineering, Fuzhou University, Fuzhou, 350108, China.
Heng LuoShanghai MetaNovas Biotech Co., Ltd, Shanghai, 200120, China.
Zuquan WengCollege of Biological Science and Engineering, Fuzhou University, Fuzhou, 350108, China.
Lun YuMetanovas Biotech Inc., Foster City, 94404, USA. lunyu@metanovas.com.
Viva Biotech (China) · CNFuzhou University · CN

Funding

No grant is acknowledged in the PubMed record.

6 · The paper itself

Abstract

The increasing prevalence of antibiotic resistance in Cutibacterium acnes (C. acnes) requires the search for alternative therapeutic strategies. Antimicrobial peptides (AMPs) offer a promising avenue for the development of new treatments targeting C. acnes. In this study, to design peptides with the specific inhibitory activity against C. acnes, we employed a deep learning pipeline with generators and classifiers, using transfer learning and pretrained protein embeddings, trained on publicly available data. To enhance the training data specific to C. acnes inhibition, we constructed a phylogenetic tree. A panel of 42 novel generated linear peptides was then synthesized and experimentally evaluated for their antimicrobial selectivity and activity. Five of them demonstrated their high potency and selectivity against C. acnes with MIC of 2-4 µg/mL. Our findings highlight the potential of these designed peptides as promising candidates for anti-acne therapeutics and demonstrate the power of computational approaches for the rational design of targeted antimicrobial peptides.

Indexed as

Acne VulgarisAnti-Infective AgentsDeep LearningAnti-Bacterial AgentsAntimicrobial PeptidesHumansPhylogenyPropionibacterium acnesAnti-Bacterial AgentsAnti-Infective AgentsAntimicrobial PeptidesAntimicrobial peptidesCutibacterium acnesDeep learningPretrained protein language embeddingTransfer learning

Identifiers

PMID38402320
PMCPMC10894229
OpenAlexW4392136837

What Socratic holds

Textmetadata
LicenceCC BY
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the Socratic graph.