Evidence map›Paper›PMID 38408164›Full record

ArticleAging cell2024

Histone deficiency and hypoacetylation in the aging retinal pigment epithelium.

Sushil K Dubey, Rashmi Dubey, Subhash C Prajapati, Kyungsik Jung, Kabhilan Mohan, Xinan Liu, Jacob Roney, Wenjian Tian, Jennifer Abney, Michelle M Giarmarco and 3 more

Open access · goldAbstract read
In one paragraph

Article in Aging cell, 2024. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 19 papers.

0numbers the graph read from it
0cells of the map it votes in
19citing papers in PubMed
7.8field-weighted citation impact, top 2% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

19 citing papers in PubMed, 24 citations in OpenAlex.

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4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

13 authors at 6 institutions in 1 country.

Sushil K DubeyDepartment of Surgery, East Tennessee State University, Johnson City, Tennessee, USA.
Rashmi DubeyDepartment of Surgery, East Tennessee State University, Johnson City, Tennessee, USA.
Subhash C PrajapatiDepartment of Biochemistry and Molecular Genetics, University of Virginia, Charlottesville, Virginia, USA.
Kyungsik JungDepartment of Surgery, East Tennessee State University, Johnson City, Tennessee, USA.
Kabhilan MohanDepartment of Surgery, East Tennessee State University, Johnson City, Tennessee, USA.
Xinan LiuDepartment of Computer Science, University of Kentucky, Lexington, Kentucky, USA.
Jacob RoneyDepartment of Ophthalmology and Visual Sciences, University of Kentucky, Lexington, Kentucky, USA.
Wenjian TianDepartment of Surgery, East Tennessee State University, Johnson City, Tennessee, USA.
Jennifer AbneyDepartment of Ophthalmology and Visual Sciences, University of Kentucky, Lexington, Kentucky, USA.
Michelle M GiarmarcoDepartment of Ophthalmology, University of Washington, Seattle, Washington, USA.
Alvaro G HernandezRoy J. Carver Biotechnology Center, University of Illinois at Urbana-Champaign, Urbana, Illinois, USA.
Jinze LiuDepartment of Biostatistics, Virginia Commonwealth University, Richmond, Virginia, USA.
Mark E KleinmanDepartment of Surgery, East Tennessee State University, Johnson City, Tennessee, USA.ORCID 0000-0001-8557-7949
East Tennessee State University · USUniversity of Kentucky · USUniversity of Illinois Urbana-Champaign · USUniversity of Virginia · USUniversity of Washington · USVirginia Commonwealth University · US

Funding

Vision Research CoreP30EY001730 · NEI · UNIVERSITY OF WASHINGTON · PI JAMES Bryant HURLEY · 1985 to 2026
$23.5M
The Role of Histone Deacetylases in Age-related Macular DegenerationR01EY028206 · NEI · UNIVERSITY OF KENTUCKY · PI KLEINMAN, MARK E · 2018 to 2022
$1.8M
Endothelial Cell Dysregulation in Neovascular AMDK08EY021757 · NEI · UNIVERSITY OF KENTUCKY · PI KLEINMAN, MARK E · 2011 to 2015
$1.6M
American Federation for Aging ResearchBrightFocus Macular Degeneration Research AwardInternational Retinal Research FoundationNEI Center Core Grant for Vision Research NIH NEI P30EY001730NEI NIH HHS K08 EY021757NEI NIH HHS NIH K08EY021757NEI NIH HHS NIH R01EY028206NEI NIH HHS P30 EY001730NEI NIH HHS R01 EY028206
6 · The paper itself

Abstract

Histones serve as a major carrier of epigenetic information in the form of post-translational modifications which are vital for controlling gene expression, maintaining cell identity, and ensuring proper cellular function. Loss of histones in the aging genome can drastically impact the epigenetic landscape of the cell leading to altered chromatin structure and changes in gene expression profiles. In this study, we investigated the impact of age-related changes on histone levels and histone acetylation in the retinal pigment epithelium (RPE) and retina of mice. We observed a global reduction of histones H1, H2A, H2B, H3, and H4 in aged RPE/choroid but not in the neural retina. Transcriptomic analyses revealed significant downregulation of histones in aged RPE/choroid including crucial elements of the histone locus body (HLB) complex involved in histone pre-mRNA processing. Knockdown of HINFP, a key HLB component, in human RPE cells induced histone loss, senescence, and the upregulation of senescence-associated secretory phenotype (SASP) markers. Replicative senescence and chronological aging in human RPE cells similarly resulted in progressive histone loss and acquisition of the SASP. Immunostaining of human retina sections revealed histone loss in RPE with age. Acetyl-histone profiling in aged mouse RPE/choroid revealed a specific molecular signature with loss of global acetyl-histone levels, including H3K14ac, H3K56ac, and H4K16ac marks. These findings strongly demonstrate histone loss as a unique feature of RPE aging and provide critical insights into the potential mechanisms linking histone dynamics, cellular senescence, and aging.

Indexed as

AgingHistonesRetinal Pigment EpitheliumAcetylationAnimalsCellular SenescenceHumansMiceMice, Inbred C57BLHistonesagingepigeneticsHINFPhistone acetylationhistonesreplicative senescenceretinal pigment epithelium

Identifiers

PMID38408164
PMCPMC11113634
OpenAlexW4392153641

What Socratic holds

Textmetadata
LicenceCC BY
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the Socratic graph.