Evidence map›Paper›PMID 38418802›Full record

ArticleJournal of applied genetics2024

Establishment of a cloning-free CRISPR/Cas9 protocol to generate large deletions in the bovine MDBK cell line.

Joanna Stojak, Dominique Rocha, Caroline Mörke, Christa Kühn, Veronique Blanquet, Hiroaki Taniguchi

Abstract read
In one paragraph

Article in Journal of applied genetics, 2024. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Not yet cited in PubMed.

0numbers the graph read from it
0cells of the map it votes in
0citing papers in PubMed
–field-weighted citation impact
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

0 citing papers in PubMed.

No citing paper in PubMed yet.

4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

6 authors.

Joanna StojakDepartment of Experimental Embryology, Institute of Genetics and Animal Biotechnology, Polish Academy of Sciences, Jastrzębiec, Poland. j.stojak@igbzpan.pl.ORCID http://orcid.org/0000-0003-2423-5026
Dominique RochaINRAE, AgroParisTech, GABI, Université Paris-Saclay, 78350, Jouy-en-Josas, France.ORCID http://orcid.org/0000-0003-4998-9641
Caroline MörkeResearch Institute for Farm Animal Biology (FBN), Institute of Genome Biology, Wilhelm-Stahl-Allee 2, 18196, Dummerstorf, Germany.
Christa KühnResearch Institute for Farm Animal Biology (FBN), Institute of Genome Biology, Wilhelm-Stahl-Allee 2, 18196, Dummerstorf, Germany.ORCID http://orcid.org/0000-0002-0216-424X
Veronique BlanquetFaculté Des Sciences Et Techniques, University of Limoges, 123 Avenue Albert Thomas, 87060, Limoges, France.ORCID http://orcid.org/0000-0002-8253-9311
Hiroaki TaniguchiDepartment of Experimental Embryology, Institute of Genetics and Animal Biotechnology, Polish Academy of Sciences, Jastrzębiec, Poland. h.taniguchi@igbzpan.pl.ORCID http://orcid.org/0000-0001-7270-390X

Funding

H2020 European Research Council 815668
6 · The paper itself

Abstract

The CRISPR/Cas9 technique applied to modify the cattle genome has value in increasing animal health and welfare. Here, we established a simple, fast, and efficient cloning-free CRISPR/Cas9 protocol for large deletions of genomic loci in the frequently used model bovine MDBK cell line. The main advantages of our protocol are as follows: (i) pre-screening of the sgRNA efficiency with a fast and simple cleavage assay, (ii) reliable detection of genomic edits primarily by PCR and confirmed by DNA sequencing, and (iii) single cell sorting with FACS providing specific genetic information from modified cells of interest. Therefore, our method could be successfully applied in different studies, including functional validation of any genetic or regulatory elements.

Indexed as

CRISPR-Cas SystemsRNA, Guide, CRISPR-Cas SystemsAnimalsBase SequenceCattleCell LineRNA, Guide, CRISPR-Cas SystemsCattleCRISPR/Cas9DeletionMDBKRegulatory elements

Identifiers

PMID38418802
PMCPMC11003909

What Socratic holds

Textmetadata
LicenceCC BY
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Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the Socratic graph.