Evidence mapPaperPMID 38425528Full record

ArticleChemical science2024

Subcellular protein turnover in human neural progenitor cells revealed by correlative electron microscopy and nanoscale secondary ion mass spectrometry imaging.

Alicia A Lork, Stefania Rabasco, Carl Ernst, André du Toit, Silvio O Rizzoli, Nhu T N Phan

Open access · diamondAbstract read
In one paragraph

Article in Chemical science, 2024. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 6 papers, 1 of them a synthesis that pooled it.

0numbers the graph read from it
0cells of the map it votes in
6citing papers in PubMed, 1 pooled it
2.6field-weighted citation impact, top 12% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

6 citing papers in PubMed, 1 synthesis or guideline pooled it, 8 citations in OpenAlex.

  1. Pooled it
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  3. Article
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4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

6 authors at 3 institutions in 3 countries.

Alicia A LorkDepartment of Chemistry and Molecular Biology University of Gothenburg SE-412 96 Gothenburg Sweden nhu.phan@chem.gu.se.ORCID https://orcid.org/0000-0001-6718-7146
Stefania RabascoDepartment of Chemistry and Molecular Biology University of Gothenburg SE-412 96 Gothenburg Sweden nhu.phan@chem.gu.se.
Carl ErnstHuman Genetics, McGill University H4H1R3 Montreal Canada.
André du ToitDepartment of Chemistry and Molecular Biology University of Gothenburg SE-412 96 Gothenburg Sweden nhu.phan@chem.gu.se.
Silvio O RizzoliDepartment of Neuro- and Sensory Physiology, University Medical Center Göttingen, Center for Biostructural Imaging of Neurodegeneration Göttingen Germany.ORCID https://orcid.org/0000-0002-1667-7839
Nhu T N PhanDepartment of Chemistry and Molecular Biology University of Gothenburg SE-412 96 Gothenburg Sweden nhu.phan@chem.gu.se.ORCID https://orcid.org/0000-0002-3576-0494
University of Gothenburg · SEMcGill University · CAUniversitätsmedizin Göttingen · DE

Funding

No grant is acknowledged in the PubMed record.

6 · The paper itself

Abstract

Protein turnover is a critical process for accurate cellular function, in which damaged proteins in the cells are gradually replaced with newly synthesized ones. Many previous studies on cellular protein turnover have used stable isotopic labelling by amino acids in cell culture (SILAC), followed by proteomic bulk analysis. However, this approach does not take into account the heterogeneity observed at the single-cell and subcellular levels. To address this, we investigated the protein turnover of neural progenitor cells at the subcellular resolution, using correlative TEM and NanoSIMS imaging, relying on a pulse-chase analysis of isotopically-labelled protein precusors. Cellular protein turnover was found significantly heterogenous across individual organelles, which indicates a possible relation between protein turnover and subcellular activity. In addition, different isotopically-labelled amino acids provided different turnover patterns, in spite of all being protein precursors, suggesting that they undergo distinct protein synthesis and metabolic pathways at the subcellular level.

Identifiers

PMID38425528
PMCPMC10901485
OpenAlexW4391335630

What Socratic holds

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LicenceCC BY
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the Socratic graph.